RNA id: TU417557


Basic Information

Item Value
RNA id TU417557
length 2015
lncRNA type inter_gene
GC content 0.43
exon number 11
gene id G303218
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 30569 ~ 51040 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTAGTTTAAGTGATTTCCCACCATGCATGACCATTTCACAATTACAAAAACTACTGTGACAAATTTAGACATCTTGTTTTCCTTAACTCACAGTGAGAAAACACACTAAATTACAGCAGTGGATTAGAGATCTAAATGGTTCTTTTTGCAGGCAGCAGAATTTGCTTTGAAACACTTATCAATAGCTGCTTAAGTattcaaaaaaaacaaaaacaattccagtataaatatttgacattttttctGAAAACCAAGCATCTTTTTCACGTCTATACCTCTTCTTTGGTTGCTGgtttataaataacattttgtcTGGTGTCTTTTTTGATTTTTGAGTACTTTTTCCTCTGTTGATATGCGTATGCGGAGAACCCCAGCAAAGTCATGACGAATAAGGCTCCAAAGGCAATGGCTAATACATCTCCTTTGGACATGTCATCAAACGTTCCACTTGTTTTAACCTTCGGTAAACTCTTTTCCCCAGTAAATGTGTTGGTGTTGGCACTGTCCACACTGGGAGAAGCGCTGAATGAGGCCAGGACTCGTCTTCCATGAAGAAGCTGAGGTGCTCTGAAGTTTTTGGACAGGAGCTGATTTTGACCTGCTTTTAGTGTTTTCTCCAGAGCCGCCAGCTGTCTTCTTGACACTGTAATGGTGTCGTTGAACATGGTCCAGTTGACAGTTTGGAAGCATGGCGGAGTGGTCAGGGACCCGTTGTATCTATAAAACTTCTCCAGATTGTTTGGTAGAAGGTGACGGATGTTAAAACCCGGGATCATTGTGTTAGACTCTTCTATACTAACATCTGTGAGTGCAGACAGGATTTTCTCATAGTTTTCATTCTCATGAAGTCCAATCCCAATAAAGCCTCCTAATACAGCCAATCCATCTTTTTTCCTCGCAGCCTCTGCTAAATCAGCATATTTGGAGTTATAATGAACAACGTGGATcttgaagaaagagagaagatcCGTCATCATAAAGGAATTTTGGGCATTGTATTGTGTATTGCAAATATGGTTAGTGCCACACAGTCTGAAGGTCGATACAGGGAGTGTAAACAAGACCTAATTGAGTGTAAATGAAGAGCAGTGATGGCTCTTCTGTTTTATAGAGTGGAGTGACGTGTTGTGAGAGTGGACATCATAAACAGAGCTGATGGATCTTCTCACCTCGGCAGGGAAGTGAACGTTATCTATGGTGTGCTCTGAGCCGGGGACCTCTATGGTGCCCCAGTGGAAGTGAAGCTGGGCAGCCAGGTAGATTTCATCAAAGCCCTTCAGTATACGCATGCTGCTGGGCAGAGACAGTTGCAACGTGTGTCCATTGTTGTGCAGCTTCAGACCAGGTTGGTCAGTTAGATCGTAACCGTCCAGCTTTATCGCAGGCAGGCTGCGATCATAGATGGCCTTGCTGGTCTCAATATCAATGGGAGACTGAGATTTTCCGTTGCAGTCGTGGTAAGCAGATCTCCATGCTTCTtgatCTTCATATCCCCATCGATGTTCATGAGATGAACTTTTCTCGtgctcatcatcatcatgctcACTGCTGCCGTCTTCCTCAGAGGAAGAGGAGTGAGTTTCTCCAGCCAGCACCTGATCCtggacgaggaggaggaggaggatgaagagtTTTAGTAGCATGCTGATGATGATTCCTGCTGAAGTCTGTCTCCTCTTAGCAGCCAGTAACAGTCCCGCACaggtgctcacacacacactcactatcttacacacttttatatacacacacacaaagcctcACCTCCATTCAATCACAGGGGGAGGGACATTTAAAAGGACCACCCTGAAGAAAAGAACCAATCAGCAGCCAGGAGCTATCTGATCGCTATGTGCCCAGTGTTCCTTTATGCTCTCTCCTTAcagctccctctctctttctctatctgctTCACTCTATcttatatatatcttatatatctctctacatctatttctctctctttcattctctctggtgctctctctctttttttctttcctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417562 lncRNA downstream 8862 59902 ~ 61313 (+) True G303221
TU417568 lncRNA downstream 34857 85897 ~ 87878 (+) True G303226
TU417572 lncRNA downstream 39200 90240 ~ 92620 (+) True G303228
TU417687 lncRNA downstream 310905 361945 ~ 363425 (+) True G303305
TU417691 lncRNA downstream 314953 365993 ~ 372699 (+) False G303307
XM_022665559.1 mRNA upstream 5921 7635 ~ 24648 (+) True LOC103030803
XM_007255303.3 mRNA downstream 20236 71276 ~ 81191 (+) True reep5
XM_022665561.1 mRNA downstream 136602 187642 ~ 309508 (+) True pam
XM_022665563.1 mRNA downstream 136805 187845 ~ 309508 (+) False pam
XM_022665560.1 mRNA downstream 141571 192611 ~ 309508 (+) False pam
XM_022665562.1 mRNA downstream 141571 192611 ~ 309508 (+) False pam
TU417690 other downstream 314953 365993 ~ 372699 (+) True G303307
TU417689 other downstream 327709 378749 ~ 383873 (+) False G303307
XR_002649404.1 other downstream 755069 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 842425 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 842720 893760 ~ 893831 (+) True trnam-cau_91

Expression Profile