RNA id: TU417572


Basic Information

Item Value
RNA id TU417572
length 877
lncRNA type inter_gene
GC content 0.49
exon number 7
gene id G303228
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 90240 ~ 92620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCTTATACCATAAGTAAATATACACTGAAGTGTATTAGATTATTTAGGTAATAAAGGTTATTTGCCTGAGGTCTTCTCTGGTCCACAGGGGTTTTCCCTCAGTGTTTTAACACAGCCGTTGTGCACAGTTTCTGCCAGTCGCCTCAAATCATGCTCCGATTTATCCACCAACTCAGCATCTCGGGCAATAGCATCCAATCTTTCCAAAGGACCCCCAAACTTCTTGTAGCTCTTAATGaatcTTCGTATTTCAGCATCACTAAAGCCCTTAATATTCTCCCTAGGAATCGTTCGAGGTCTGCCTCTCTTCTTAGGCCGTTTTCGATCTGACGCGGAGTCGCTGTCTGAGCCAGAGTATCTTCTGTTCCGACTCCGTCTGCCCTCGTTACCGTTGAAGCTTATCTGTTTGGCACAGTTCCTCATGCGGGGAAGCAGGTAGATCTCTGCCAGCTCCTtctgcctctcctcctcctccatcctccGCCGCTGCTCCTCTGGGATAATGTCGTCCCAGTTCCTCTGGTTGCCATCTGCGTCCATGTCAATCTCCTCCTCTTCCATCATAGTGAAGTTTGCCACCTTAAACTGTGAGAGAAGTTCCTCTCCTACAGTAGACGGGCCAGGGTCATTTTCTCTGGTTTCTGCTCTCTTCAGAATTTCATCAATATCCATTTCCTGAGGCTCCTGTTCCTCTCCCTCTGGCTCCTTGAAGAGTTCTTCAGACCAAACTTTAGAATAGCCGACAGCTCCTCCTTGTTGAAAGGGGTGGAACTGCTGGAGGGGGCAGCACCAGTATGGAGGACAGTCTTTCCTGTCGTGTCCATCCTCTGAATCACAAGGTGGTCCAGCACCATCTTTTTCTTGGCTCTTTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417568 lncRNA upstream 2362 85897 ~ 87878 (+) True G303226
TU417562 lncRNA upstream 28927 59902 ~ 61313 (+) True G303221
TU417557 lncRNA upstream 39200 30569 ~ 51040 (+) True G303218
TU417687 lncRNA downstream 269325 361945 ~ 363425 (+) True G303305
TU417691 lncRNA downstream 273373 365993 ~ 372699 (+) False G303307
TU417692 lncRNA downstream 273373 365993 ~ 372699 (+) False G303307
TU417693 lncRNA downstream 273373 365993 ~ 383873 (+) False G303307
TU417694 lncRNA downstream 273373 365993 ~ 383873 (+) False G303307
XM_007255303.3 mRNA upstream 9049 71276 ~ 81191 (+) True reep5
XM_022665559.1 mRNA upstream 65592 7635 ~ 24648 (+) True LOC103030803
XM_022665561.1 mRNA downstream 95022 187642 ~ 309508 (+) True pam
XM_022665563.1 mRNA downstream 95225 187845 ~ 309508 (+) False pam
XM_022665560.1 mRNA downstream 99991 192611 ~ 309508 (+) False pam
XM_022665562.1 mRNA downstream 99991 192611 ~ 309508 (+) False pam
XM_022665564.1 mRNA downstream 99992 192612 ~ 309508 (+) False pam
TU417690 other downstream 273373 365993 ~ 372699 (+) True G303307
TU417689 other downstream 286129 378749 ~ 383873 (+) False G303307
XR_002649404.1 other downstream 713489 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 800845 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 801140 893760 ~ 893831 (+) True trnam-cau_91

Expression Profile