RNA id: TU417687


Basic Information

Item Value
RNA id TU417687
length 1481
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G303305
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 361945 ~ 363425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTTACCGGCCGGGGGCTCGGGACTCGGACTCACGGCGAGTAGAGCCTGTAGTATCGGCGGCTCGTCGAATGGTGGGCAGGGGGGGGCAGACTGCAGCCATTACTACCACTACCATTACTACCACATCTCACATCCTACTGCTGGTGTAGCAGCGCTACAGAGAGCAGGACCACCGCGGGGGGCTTAATTAGACTGTACTGGTTTGtgattctgatttattttacagtgatTCTGATTATTGCAATGATTTTGTCTCTTTTGTCTATAGGGTTATAGTGTATAAATATGCTGTGGGTTGCTTACAAAAGGTCTGTAGCAATATAACTAAGTTAGCTAtgtaagctaagctaagatagCTGTAGCTGAAGGCCTGCAAacgagaataaaaaatataaactagtTGGATGACATCATGTCATATATAGACAGATATTATTGTAtctatgtgtttgtgttggCTGGATTAGATTGAcagttaatattaaaatataaatatacagtatattagctATCTGAGCTagctctctgcagtcaggtgcTGTTTCCATCCGCTGTGTCTGACAGGAGGCTCCCAGTGTTGTGGGttagaaagaggaggaggaggagaactgCAGTCTCATCTCTCTACCAGCTTCAGGCTTCAGCTCACTCCAGctaaatgttttatatctgtatattgagctattttatattttatattgagctAATCCAGTGAGTTTATACTCAGCTCAGTTCATTATGTTAACAGCAGCATTATAGGTCTACTGTTGTTATTATCAGCAGGTCCTTGGTGGAGCTACTGGGCCACAGTAGAACATACTGTTCCATAAATGCAGATTTAAGGTGTGTAAAGCCCCAGTCAGGAGCCCTGCTGCAGAATCTGTTTCTACAGCAGCCAAAAGTTCTTAACCCTTAAGAGCTCAGAACCATGTCTAAATATTGATgccaaaatatttcaaaattaaatcagatcaattcagtgagcagctcattcttgtttttttttttttttatcgggcacacaactgtaaatattttaagttcaAAATCACAATGTAACAAATTACACAACAGCaattttataacttttatattttaacattttcatatCTGTATTGACATGAAGTTGCTTTAAAAAACTAGACATCAGGCAggaatgcaccaaaatgaatttttctgttatttttggttgccaaattttggtctattatattttaacattttgtactTAGAAAATAAGGTCAGGACTAGTTATATAAAATGgtaagcatttaaataaaacatttgaattgttaaatggttgtaaCTAATGAGTTATTTTGTTAGTTGACtaatctaatgttttttttttcttagttcaatagtcagtgattatttctgccatgttctccatctttaaaaacaataaaaacagctgaacataatatttaaaatccatttaaaagtctagatgttttttaaacatggaaatGACAGAttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417572 lncRNA upstream 269325 90240 ~ 92620 (+) True G303228
TU417568 lncRNA upstream 274067 85897 ~ 87878 (+) True G303226
TU417562 lncRNA upstream 300632 59902 ~ 61313 (+) True G303221
TU417557 lncRNA upstream 310905 30569 ~ 51040 (+) True G303218
TU417691 lncRNA downstream 2568 365993 ~ 372699 (+) False G303307
TU417692 lncRNA downstream 2568 365993 ~ 372699 (+) False G303307
TU417693 lncRNA downstream 2568 365993 ~ 383873 (+) False G303307
TU417694 lncRNA downstream 2568 365993 ~ 383873 (+) False G303307
TU417748 lncRNA downstream 76997 440422 ~ 442217 (+) False G303340
XM_022665566.1 mRNA upstream 2161 315982 ~ 359784 (+) False ppip5k2
XM_022665567.1 mRNA upstream 2161 315982 ~ 359784 (+) True ppip5k2
XM_007255307.3 mRNA upstream 2161 315982 ~ 359784 (+) False ppip5k2
XM_007255312.3 mRNA upstream 2161 315983 ~ 359784 (+) False ppip5k2
XM_007255308.3 mRNA upstream 2161 315983 ~ 359784 (+) False ppip5k2
XM_022665558.1 mRNA downstream 3522 366947 ~ 372699 (+) True cunh5orf30
XM_022665573.1 mRNA downstream 18630 382055 ~ 383879 (+) True LOC103024265
XM_007255319.3 mRNA downstream 22078 385503 ~ 389270 (+) True LOC103024567
XM_007255323.3 mRNA downstream 32534 395959 ~ 398846 (+) True LOC103025635
XM_022665565.1 mRNA downstream 39042 402467 ~ 404751 (+) True LOC103031748
TU417690 other downstream 2568 365993 ~ 372699 (+) True G303307
TU417689 other downstream 15324 378749 ~ 383873 (+) False G303307
XR_002649404.1 other downstream 442684 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 530040 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 530335 893760 ~ 893831 (+) True trnam-cau_91

Expression Profile