RNA id: TU417693


Basic Information

Item Value
RNA id TU417693
length 2229
lncRNA type read_through
GC content 0.43
exon number 6
gene id G303307
representative False

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 365993 ~ 383873 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttctCCACTCAGTTCATAGGCAGTTCCTGTAGTAAGGCACCCATAGACCACTAATCTTAATTTAAGAACTGTTAATCAGAAGGTATGGATGAGGCATTGTCAGTCAGGCCCGCCGACTAATTTAATCGTTAACCTGtgaacaagaaaaaagaaaagaaaaacaaaaaaaaaattgttttgatagtgtgtgtatgtatgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgcgtgtgggcACATTTGTGCAGAAGTATGTTTGAGTGTATGTGAATGTATGTGTATGTCAGATGTCAGGAGGATACGTTTGATAAACGTGAGGGTTGAGGTCATTCAGGATTAGCAATAAATGACTTTTGGCTTAATAATTGCTACTACTGTATGTGCGTGTACGCCTGTGCTATAAGGTGTTATATACCTTTGTGTGGAAAAGCCTCTTTTGCAGAAACGTAAGTATGTATGTAAGCTCTGCACTGGATCGCACTGTTAGTACATCTggatatgtatatttattgtttttgtattttatttgattttgtttaTATCATTCATTTTGTCCTGGTTAGTTCACTGTGTTGTTCTCCGTTCTCCTCTAATGTTATGTTAGCGTATTCGCAACTATAGCATCTTCTCAAATGTGTCATCAGGTGAGCTCACCTTCACCTTCGCTCCTGCTTTtgcctccgtctggcaggaatCTTCATGTAAAACTCTGACTTGTTACACAATCTGTGGGTTATTTAAGACAGCGCTGTGAGAGGCTTTGAGCTGGAGAGGCTTATCTTCAGAGAACCTGAGCTAAGATTAGAGCCTCATATACACACTGTTAATCCTCCCTTTCCATTTTttcaccccccacacacaccccgTGCCCCCATACACCGCAGGACGCCGCTCGGATTACTCTagtcctgtttttttcttttccagatTGAGTAATCCTTCCTGTTGGGAATCGCTTTCATGATAACGTGAAGGATCTACATGGGTATACAGCGCTGATATGATGCTGGTCCATGTTTACACACATCATTATATCAGATATGAATATGATCctgctttctttattttgttgttggtgTTTATTTCTCATCTTGGTGCACAGTATTGCTACTGAAACAAACCAAAGGATAAACTTACTTTGGGTGTCCTGGGGAAAACTTGATTGCTAatgtgattttcttttcttttttttttcttttttgtggaaCACCTGACAATCATATCCAGATTTTCTACCCAATAAGCCAAACAGCTGGAAACGTCAGCTGGTTCACATCGCTCATATTCTGCTGCCGGCCAgCAACTGCCCCAGTTCCTCAAGCGGTATGTATTTAAGGGAGGTGTGCAAGACAGGTGACACAGAAGATTCACAGCACTTCTAGAGATCCGTTCTCCTCCTGCAGCAGGATGAAGATCTGGGTTCTCCTTCTGCTGGTGGCGGCAGTCAGCACCAAGCGGTTCACCAAATGTGAACTGGTGAGGACCCTAAAAGCAGCTGGAATGGACGACTTTTTTAGCGTCAGCCTGGCTCACTGGGTCTGCATGGCCTTTGCGGAGTCCAATTACGACACTCTGGCCATACACTTCATCGCAGAGGATATCTTTGTTGTAATATTCCAGCAACTGCCCCAGTTCCTCAAGCGGTATGTATACGGAACACTACGGCATCTTCCAGATCAACAACCGCCGGTGGTGTAGCGATGGCAAATTCCCCGGCAAAAAAGACTGTCCATTCACCTGCAACCAGCTGTTCTCCCTCCAGAATAGCATCGATTGTGCCAAGATCATAGTGCAGAAGCTGGGCATGACACCCTGGAAAGGCTGGCGGTACGAATGTTGGGGCCAAGATGTGAGCAAGTACGTCGCAGGCTGTGGCGTGTAAATGAAGACCCCGGAGTGATGCACCCAAACGAGATGCCTCTTCAATTCCACACTGTTTCAATTCTTTAGCCAGTCTTTTAACAGAGTATTTACCCAGAAACTAGGATAAGGATAAACTAGGATCGTTCCATTGTTTTCATAAAGAATGAACCATTTAAACCTAACAAACATGTACTCCAACattttgatttctgattttgctaaacATACTTGTTTCCCAAAACTGCCATTGCCAAactgtattataaaaaataaattgtataata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417687 lncRNA upstream 2568 361945 ~ 363425 (+) True G303305
TU417572 lncRNA upstream 273373 90240 ~ 92620 (+) True G303228
TU417568 lncRNA upstream 278115 85897 ~ 87878 (+) True G303226
TU417562 lncRNA upstream 304680 59902 ~ 61313 (+) True G303221
TU417557 lncRNA upstream 314953 30569 ~ 51040 (+) True G303218
TU417748 lncRNA downstream 56549 440422 ~ 442217 (+) False G303340
TU417744 lncRNA downstream 59315 443188 ~ 446559 (+) True G303340
TU417753 lncRNA downstream 59986 443859 ~ 445869 (+) True G303341
XR_002649407.1 lncRNA downstream 167497 551370 ~ 567446 (+) True LOC111191252
TU417857 lncRNA downstream 408479 792352 ~ 795312 (+) True G303418
XM_007255313.3 mRNA upstream 6209 315983 ~ 359784 (+) False ppip5k2
XM_007255319.3 mRNA downstream 1630 385503 ~ 389270 (+) True LOC103024567
XM_007255323.3 mRNA downstream 12086 395959 ~ 398846 (+) True LOC103025635
XM_022665565.1 mRNA downstream 18594 402467 ~ 404751 (+) True LOC103031748
XM_022665569.1 mRNA downstream 48714 432587 ~ 548171 (+) True syk
XR_002649404.1 other downstream 422236 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 509592 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 509887 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 510089 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 510304 894177 ~ 894248 (+) True trnam-cau_93

Expression Profile