RNA id: TU417744


Basic Information

Item Value
RNA id TU417744
length 561
lncRNA type intronic
GC content 0.45
exon number 2
gene id G303340
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 440422 ~ 446559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccagctagcaacaccttagcaaccactaggaaaacgttagaaactgcctagcaacagcttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagcaaccacgttaaaaacgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacattagcaactgcttagcaaccactttagaaattatagcaactgcctagcaaccacttagcaaccacctggaatacgttagcaactgcctagcaacagcttagcaaccacctagcaacaccttagcaaccacctggaaaacattagcaactgcttagcaaccacttagcaaccacttagcaaccactctagaaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccacctagcaacaccttagcaaccgcatagcaacaccttagcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417748 lncRNA upstream 971 440422 ~ 442217 (+) False G303340
TU417693 lncRNA upstream 59315 365993 ~ 383873 (+) False G303307
TU417694 lncRNA upstream 59315 365993 ~ 383873 (+) False G303307
TU417691 lncRNA upstream 70489 365993 ~ 372699 (+) False G303307
TU417692 lncRNA upstream 70489 365993 ~ 372699 (+) False G303307
XR_002649407.1 lncRNA downstream 104811 551370 ~ 567446 (+) True LOC111191252
TU417857 lncRNA downstream 345793 792352 ~ 795312 (+) True G303418
TU417859 lncRNA downstream 345793 792352 ~ 794940 (+) False G303418
TU417843 lncRNA downstream 359154 805713 ~ 808564 (+) False G303413
TU417844 lncRNA downstream 359154 805713 ~ 808564 (+) False G303413
XM_022665565.1 mRNA upstream 38437 402467 ~ 404751 (+) True LOC103031748
XM_007255323.3 mRNA upstream 44342 395959 ~ 398846 (+) True LOC103025635
XM_007255319.3 mRNA upstream 53918 385503 ~ 389270 (+) True LOC103024567
XM_022665573.1 mRNA upstream 59309 382055 ~ 383879 (+) True LOC103024265
XM_022665558.1 mRNA upstream 70489 366947 ~ 372699 (+) True cunh5orf30
TU417689 other upstream 59315 378749 ~ 383873 (+) False G303307
TU417690 other upstream 70489 365993 ~ 372699 (+) True G303307
XR_002649404.1 other downstream 359550 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 446906 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 447201 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 447403 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 447618 894177 ~ 894248 (+) True trnam-cau_93

Expression Profile