RNA id: XR_002649404.1


Basic Information

Item Value
RNA id XR_002649404.1
length 169
RNA type ncRNA
GC content 0.44
exon number 2
gene id LOC111191247
representative False

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 806090 ~ 806546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAGCCAGTGGAGGATGGctggctaagctaactagcttttGGAAGAATAATAAGCTAATTATCTTAGCCAACCATCCCCCActcgctagccttagctatCTTAAAACGAGCAGTTGtaattagctacagttagctcgattacctgcagcagcacctGCTCATTCAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417857 lncRNA upstream 10797 792352 ~ 795312 (+) True G303418
TU417859 lncRNA upstream 11169 792352 ~ 794940 (+) False G303418
XR_002649407.1 lncRNA upstream 238663 551370 ~ 567446 (+) True LOC111191252
TU417744 lncRNA upstream 359550 443188 ~ 446559 (+) True G303340
TU417753 lncRNA upstream 360240 443859 ~ 445869 (+) True G303341
TU417845 lncRNA downstream 739 807103 ~ 809762 (+) False G303413
TU417846 lncRNA downstream 739 807103 ~ 808564 (+) False G303413
TU417847 lncRNA downstream 739 807103 ~ 809762 (+) True G303413
TU417862 lncRNA downstream 6515 812879 ~ 813279 (+) False G303421
TU417863 lncRNA downstream 6515 812879 ~ 813722 (+) True G303421
XM_022665569.1 mRNA upstream 257938 432587 ~ 548171 (+) True syk
XM_022665565.1 mRNA upstream 401358 402467 ~ 404751 (+) True LOC103031748
XM_007255323.3 mRNA upstream 407263 395959 ~ 398846 (+) True LOC103025635
XM_007255319.3 mRNA upstream 416839 385503 ~ 389270 (+) True LOC103024567
XM_022665573.1 mRNA upstream 422230 382055 ~ 383879 (+) True LOC103024265
TU417689 other upstream 422236 378749 ~ 383873 (+) False G303307
TU417690 other upstream 433410 365993 ~ 372699 (+) True G303307
trnar-ccu_63 other downstream 87101 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 87396 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 87598 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 87813 894177 ~ 894248 (+) True trnam-cau_93