RNA id: TU417847


Basic Information

Item Value
RNA id TU417847
length 578
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G303413
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 805713 ~ 809762 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATTTTCGCGcgtgcgcagtcggccgctaattttcgcgcgtgcgcagtcggccgctaaatttcGCGCATGCGCATaccacattatattatatttaattggtCTTGTGGGAACACACCGCTAGGTATACATTAACTAAAAGTGTTGCTCCCTTCTGGCTCGGGATGCGGCTGTGCACTTGGGCGCGTGCAATTCCACAGAAGCTGCAACTGGATTTTATAAAGATAAGAGAAAAGAATGCTTTCGCCGTGGATTTGACATGAAAAGGGAAGCTGGGGCAGAAGAACGAGGAGCTGTACTCTCTGGGTGAAGGAGGATTTGGCGCAGTGTTTGCAGGCTATTGACCTGAGGACCTACTGCCTGGACAACTTGAAGAACCTCCCCCTGGAAGTGGCACTCATGCACATGGCTGGTGTTGACTCATTCATTGCTGGAGGGACCTCAAGCTTCTCCATAGAGCTGCTGGACTGGTCTAAGCTTCAGGACGAGGTCGTGTCGGTGTGGGACCTATGCTCCATATGCTTCTGCTTGGACCTTTTCGATTACATCCAGGCCAGCGGATGCCTGCAGGAGGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417842 lncRNA upstream 557 806090 ~ 806546 (+) True LOC111191247
TU417857 lncRNA upstream 11791 792352 ~ 795312 (+) True G303418
TU417859 lncRNA upstream 12163 792352 ~ 794940 (+) False G303418
XR_002649407.1 lncRNA upstream 239657 551370 ~ 567446 (+) True LOC111191252
TU417753 lncRNA upstream 361234 443859 ~ 445869 (+) True G303341
TU417862 lncRNA downstream 3117 812879 ~ 813279 (+) False G303421
TU417863 lncRNA downstream 3117 812879 ~ 813722 (+) True G303421
XM_022665569.1 mRNA upstream 258932 432587 ~ 548171 (+) True syk
XM_022665565.1 mRNA upstream 402352 402467 ~ 404751 (+) True LOC103031748
XM_007255323.3 mRNA upstream 408257 395959 ~ 398846 (+) True LOC103025635
XM_007255319.3 mRNA upstream 417833 385503 ~ 389270 (+) True LOC103024567
XM_022665573.1 mRNA upstream 423224 382055 ~ 383879 (+) True LOC103024265
XR_002649404.1 other upstream 739 806109 ~ 806364 (+) False LOC111191247
TU417689 other upstream 423230 378749 ~ 383873 (+) False G303307
TU417690 other upstream 434404 365993 ~ 372699 (+) True G303307
trnar-ccu_63 other downstream 83703 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 83998 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 84200 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 84415 894177 ~ 894248 (+) True trnam-cau_93

Expression Profile