RNA id: TU417857


Basic Information

Item Value
RNA id TU417857
length 257
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G303418
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 792352 ~ 795312 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtggttgctaagtggttgctaggcagttgctaacatattccaggtggttgctaggcagttgctaagtggttgctaggcagttgctaatgttttccaagtggttgctaggcagttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaagtggttgctaggcagttgctaatgttttccaggtggttgctaggcagttgctaagttgttgctaggcagttgctaacgttttccaggtggttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649407.1 lncRNA upstream 224906 551370 ~ 567446 (+) True LOC111191252
TU417744 lncRNA upstream 345793 443188 ~ 446559 (+) True G303340
TU417753 lncRNA upstream 346483 443859 ~ 445869 (+) True G303341
TU417748 lncRNA upstream 350135 440422 ~ 442217 (+) False G303340
TU417693 lncRNA upstream 408479 365993 ~ 383873 (+) False G303307
TU417843 lncRNA downstream 10401 805713 ~ 808564 (+) False G303413
TU417844 lncRNA downstream 10401 805713 ~ 808564 (+) False G303413
TU417849 lncRNA downstream 10401 805713 ~ 808564 (+) False G303413
TU417842 lncRNA downstream 10778 806090 ~ 806546 (+) True LOC111191247
TU417845 lncRNA downstream 11791 807103 ~ 809762 (+) False G303413
XM_022665569.1 mRNA upstream 244181 432587 ~ 548171 (+) True syk
XM_022665565.1 mRNA upstream 387601 402467 ~ 404751 (+) True LOC103031748
XM_007255323.3 mRNA upstream 393506 395959 ~ 398846 (+) True LOC103025635
XM_007255319.3 mRNA upstream 403082 385503 ~ 389270 (+) True LOC103024567
XM_022665573.1 mRNA upstream 408473 382055 ~ 383879 (+) True LOC103024265
TU417689 other upstream 408479 378749 ~ 383873 (+) False G303307
TU417690 other upstream 419653 365993 ~ 372699 (+) True G303307
XR_002649404.1 other downstream 10797 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 98153 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 98448 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 98650 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 98865 894177 ~ 894248 (+) True trnam-cau_93

Expression Profile