RNA id: TU417863


Basic Information

Item Value
RNA id TU417863
length 717
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G303421
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 812879 ~ 813722 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGTTCTGCCTGTGAACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTTGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTTCTCATGAGTGGTTTACCCATGAGGCCAAAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCATGGAGCTCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTACGACCCCTGGCTAAGTATACACCACGACACAGCCACCACACCAGGCACACCAGTCAGGTACCATATAagacaatagtaataataataataaaaaaagcaatatttttAATCTCTAGTTTAGAGTGTTCTctagtagagctgggcgatttatcgattaattcgaatttacagttaaggacaaggtgtttttatgaaaatcgattttctctgagttttcattttcaccaccgacgctCCTCTGTGGGCACAGAGTGAGTTTAGCTAGCTCCCTCCCTCCCGTGCGCGTGCGTAACCCCCgcacctccctccctcacttccTCCCTCccgtacacatacacacacacaaaatctaGCGACTCCGTGATCTGGAGTTGGTTCGGTTTTGCGGTGAAGAAGTGCTGCTATCATAGGAATgaacgcagcagcagcactagttcACCGTTCAACGTTAAACAAGGAACTGTCCCTGGCACATCTTCCAACCGTGTACCAGGTTCTGTATGCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417845 lncRNA upstream 3117 807103 ~ 809762 (+) False G303413
TU417847 lncRNA upstream 3117 807103 ~ 809762 (+) True G303413
TU417849 lncRNA upstream 4315 805713 ~ 808564 (+) False G303413
XM_022665569.1 mRNA upstream 264708 432587 ~ 548171 (+) True syk
XM_022665565.1 mRNA upstream 408128 402467 ~ 404751 (+) True LOC103031748
XM_007255323.3 mRNA upstream 414033 395959 ~ 398846 (+) True LOC103025635
XM_007255319.3 mRNA upstream 423609 385503 ~ 389270 (+) True LOC103024567
XM_022665573.1 mRNA upstream 429000 382055 ~ 383879 (+) True LOC103024265
XR_002649404.1 other upstream 6515 806109 ~ 806364 (+) False LOC111191247
TU417689 other upstream 429006 378749 ~ 383873 (+) False G303307
TU417690 other upstream 440180 365993 ~ 372699 (+) True G303307
trnar-ccu_63 other downstream 79743 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 80038 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 80240 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 80455 894177 ~ 894248 (+) True trnam-cau_93

Expression Profile