RNA id: XM_007255303.3


Basic Information

Item Value
RNA id XM_007255303.3
length 998
RNA type mRNA
GC content 0.46
exon number 5
gene id reep5
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 71276 ~ 81191 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACGGtgcatccagcagcagcagggtggaggagagagagagagagagagagagagagaggctgcagTTGGCGAAGTTTTTATTCCACTGCTGAACAAAGGCGATATTTTACACGGTTAAACATGGCGCAGGCTCTGAAAGAGAGATTCGAGAGGTTTCTTTATGAGAAGAATATGATGACGGACGTGTTGGGGAAGATAGAGGCTAAGACCGGGGTCAGCCGCACGTATATCGCCCTGGCTGTCATCGCACTGATTGCCATCTACCTCGTGGTGGGTTATGGCGCTTCTCTGCTGTGCAACCTGATCGGATTCGTCTACCCGGCCTACATATCAATCAAAGCCATCGAAAGCACAGACAAAGACGATGACACAAAATGGCTCACCTATTGGGTTGTGTACGGTGTGTTCAGCGTGGCTGAGTTCTTTGCTGACATCTTCCTGTCCTGGTTCCCATTCTATTACATTGGAAAGtgtgcTTTCCTGGTTTGGTGCATGGCCCCCACTCCCGCTAACGGCTCCATCATGATCTACACGCGCATCATCCGCCCTTTTTTCCTGAGGAACGAGGCCAAGATTGATGATGTAGTGAAGGATATCAAAGGCAAAGCGTCAGATGCTGCAGACAAGATTAGAGATGAGGCCAAGAAAGCCACAGCAAACCTCATATTTGAAGAGAAGAAGACTTACTAATTATCTCTGGGATAGAAACCACTTCAGCTGCTGCGTATCCTGTACGACCTTCACAAGCCTGAAGAAAATGTTGCCTTTggtttttagtgtgtgtgcgtatgcgcgtgtgtatgtgtgtaaacaaCTGGAAAAATGCTCCTtgtttctctcactttttctgtaTGTAAAAACAACGGCAGTGCTGCCAATGCAAAACGAgttagttttaaatatatatatatatatatcacacataATATCAACCGCATGAGAGTGACCATCTACCGCTGTGCTTCAGTCCCAATAAACCAAACTCTGACGTCTTAA

Function

GO: NA

KEGG:

id description
K17279 REEP5_6; receptor expression-enhancing protein 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417562 lncRNA upstream 9963 59902 ~ 61313 (+) True G303221
TU417557 lncRNA upstream 20236 30569 ~ 51040 (+) True G303218
TU417568 lncRNA downstream 4706 85897 ~ 87878 (+) True G303226
TU417572 lncRNA downstream 9049 90240 ~ 92620 (+) True G303228
TU417687 lncRNA downstream 280754 361945 ~ 363425 (+) True G303305
TU417691 lncRNA downstream 284802 365993 ~ 372699 (+) False G303307
TU417692 lncRNA downstream 284802 365993 ~ 372699 (+) False G303307
XM_022665559.1 mRNA upstream 46628 7635 ~ 24648 (+) True LOC103030803
XM_022665561.1 mRNA downstream 106451 187642 ~ 309508 (+) True pam
XM_022665563.1 mRNA downstream 106654 187845 ~ 309508 (+) False pam
XM_022665560.1 mRNA downstream 111420 192611 ~ 309508 (+) False pam
XM_022665562.1 mRNA downstream 111420 192611 ~ 309508 (+) False pam
XM_022665564.1 mRNA downstream 111421 192612 ~ 309508 (+) False pam
TU417690 other downstream 284802 365993 ~ 372699 (+) True G303307
TU417689 other downstream 297558 378749 ~ 383873 (+) False G303307
XR_002649404.1 other downstream 724918 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 812274 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 812569 893760 ~ 893831 (+) True trnam-cau_91

Expression Profile