RNA id: XM_007255312.3


Basic Information

Item Value
RNA id XM_007255312.3
length 6232
RNA type mRNA
GC content 0.47
exon number 32
gene id ppip5k2
representative False

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 315982 ~ 359784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttcttttttttttcagtaaatcgCTGAGTGTCTGTGAAAGTCGTTGTTTGTAGCTGCAGTGACTCATTCACGTTATTAACGCTAGTTTGGGCTTAAATATAACTATAACTGTGTACCGAATTCAGATATTCTGAGCATTTTAACGAATGAGAAACCGGTATTTTTAACGATATATATAACCTACATAAGCAGAGTTccgttagttagctagctagctaacagtaaAGGTAAcggctagctaatgctaactttcAGATTTTTCACATTAGGGTGAGGGGGCGAGCGCTGACTCGCTAACATTAAGGGTTACGGTTAACACTGAAGGGTTAATGCTAAAGCTGGCTAGCTATCTGTCTAACTAAGCTAGTGTTAGCCAGGCTAAACACTGGCTGTGTGTTTGCATTGGTTGGGCTTGGTTGTTAGCTTCACAGGCTAACTAACGCGTTTAATGGGAACCCAGCAACGAGCCGCCTGGCTCTGAACTCCAGCAGCGCTGGTTCTCTGACAGCAGCTGCCTGCCCGGGGACACGGCGCGGCGGATTTAGTGAGAGGGTGAAGATTATCCTGATGGCTGGCTCTGAAGAACAGGAAGGGGGGAGAGAGGCTGAAGTTCGGCTGCTTTAACCCCTCTGGTCTATGAGCCTGCTCTGGGAGCAGCTGCCTTCGCCTCTGCTGCCCTGCTGAGTACACTGACCCGCAGGCCCGGAGGCACAGTGTGCAGCTCAGGACGGCGGGAGACACTCTGTAGGCACTCTGGTCCAGCAGGGACCACATCGTGCTGGACAGAATGTCTGAGACTGAGGATGTAGATCATCCACGCTTTTTTGTGGGTGCTGATGATGCAGAGGGGGAGGAGCTACTGGACCCAGGCAGGGTGCTGGGCTACGACTGCCTTTACGAGAATGTTGAGGAGGAAGACGAGGACGCAGATGAGGAAGAGTATGACTCGCCtccagagagacagatagtggTGGGAATCTGTGCCATGGCCAAGAAGTCAAAGTCCAAGCCTATGAAGGAGATCCTGGAGCGCTTGTGTCTGTTTAAGTACATCACGGTTGTGACTTTTGAGGAAGAAGTCATCCTTAGTGAGCCTGTGGAGAACTGGCCACTGTGTGACTGTCTTATTTCCTTCCACTCTAAAGGATTTCCACTGGATAAAGCTGTGGCTTATGAGAAGCTCAGGAATCCATTTGTGATCAACGATCTGGATCTGCAGTACTTCATTCAGGACAGGAGGGAGGTGTATCGGATCCTGAAGGCTGAGGGCATCCAGCTTCCACGCTATGCTGTTCTGAACAGAGACCCAGCAAGACCACAGGAGTGTAACCTGGTTGAAGGGGAGGACCATGTGGAAGTGAATGGAGAAATTTTCCAGAAGCCTTTTGTAGAGAAACCAGTCAGTGCTGAGGACCACAACGTCTATATCTACTACCCCACCTCTGCAGGAGGAGGCAGCCAGAGGCTCTTCCGCAAGATTGGCAGCAGGAGTAGTGTCTATTCTCCTGAGAGTAATGTCCGGAAAACAGGTTCCTACATATACGAGGAGTTTATGCCTACAGACGGGACTGACGTCAAGGTGTATACTGTGGGACCAGACTATGCACACGCAGAGGCTCGTAAGTCCCCTGCTTTGGATGGAAAGGTGGAACGAGACAGTGAGGGGAAAGAGGTTCGCTACCCTGTGATTCTCAACGCCAGAGAGAAGCTAATAGCCTGGAAAGTCTGCTTGGCCTTTAAGCAAACAGTGTGTGGGTTTGACCTCCTGCGTGCCAACGGTCAGTCATATGTCTGTGATGTGAATGGCTTCAGCTTTGTGAAGAATTCGATGAAGTATTACGATGACTGTGCAAAAATACTGGGGAACATTGTGATGAGAGAACTGGCTCCTCAGTTCCAGATTCCGTGGTCCATCCCTTTGGAAGCAGAGGATATCCCCATAGTTCCCACCACTTCAGGGACAATGATGGAGCTGAGATGTGTGATTGCTGTGATTCGACATGGAGATAGAACCCCCAAGCAGAAGATGAAAATGGAGGTTCGACATCAAAGgttTTTTGATCTCTTTGGAAAATACGAAGGGTACAAAAGCGGAAAGCTAAAACTGAAAAAGCCAAAGCAACttcagGAAGTTTTAGACACTGCCAGACAACTGTTGGTTGAACTCGGGCAAAATAACGATACGGAAATTGAAGAAAGCAAAGCCAAACTTGAACAGCTAAAAACGGTCCTTGAAATGTATGGACATTTTTCAGGTATCAATCGCAAGGTACAACTAACATATCTCCCCCATGGTTGCCCAAAAACATCAAGTGAAGAGGAAGATGTGCGGAGGGATGACCCGTCTCTGTTGCTGGTACTGAAGTGGGGTGGGGAATTGACTCCAGCAGGCAGGGTTCAGGCAGAGGAGCTGGGCCGAGCGTTTAGGTGCATGTACCCTGGAGGACAAGgCGATTATGCTGGCTTTCCTGGTTGTGGCCTGTTGCGTCTTCACAGCACGTATCGGCATGACCTGAAGATCTACGCTTCCGACGAGGGCCGCGTTCAGATGACTGCTGCTGCTTTTGCTAAGGGTCTACTGGCGCTGGAGGGCGAGCTGACCCCTATCCTAGTGCAGATGGTGAAGAGTGCCAACATGAACGGTCTGCTGGACAGCGACAGTGACTCTCTCAACAGCTGCCAGCAGAAAGTCAAAGCTCGGCTACACGACATCCTGCAGAAGGACAGAGACTTTGCCTCGGAGGACTATGAGAAGCTGGCTCCAACTACGAGTACATCACTGGTGAAGTCTATGCAGATGATCAAGAACCCAGTGAAGACATGTGATAAGGTGTATTCCCTTATCCAGAATTTAACCCTACAGATTAGGCAGAGGATGGAGGACCCCAAATCAGCAGATATCCAGCTTTACCACAGCGAGACTCTGGAGTTGATGCTGCGCCGCTGGTCCAAACTGGAGAAAGACTTCAAGATGAAGAATGGCCGTTACAATATCAGCAAGATCCCAGACATCTACGACTGCATTAAGTATGATGTGCAGCACAACAGCTCGCTCAAGCTGGACAACACCATGGAGATCTACCGCCTTTCCAAAGCTCTGGCCGACATAGTCATTCCACAAGAATACGGGATTTCACAAGCTGAAAAACTAGACATTGCCAAAGGCTACTGCACACCTCTCATTCGCAAAATCCGCTCAGACCTCCAGAGGACACAGGATGATGACACTGTCAACAAGCTTCACCCAGTATACTCCAGAGGTGTCATGTCTCCAGAACGCCATGTGCGCACCAGGCTTTACTTCACAAGCGAGAGTCatgtgcactctctcctctccatCCTGCGCTATGGAGCCCTCTGTGATGAGACCAAAGATGAGCAGTGGAAGAGAGCCATGGACTACCTAAAAGTTGTCAGTGAGCTGAACTACATGACTCAGATTGTGATCATGCTGTATGAGGACCCTAACAAGGATCCCTCATCAGAGGAGCGTTTTCATGTGGAGCTGCATTTCAGCCCTGGAGCAAAAGGCTGTGAGGAGGACAAAAACCTGCCGTCAGGATTTGGCTACAGACCAGCATCCAGAGAGAACGAGGGCTCCAAGAAAAAGTCCCAGAATGACAGTGATGAGGAGACCAGCAGCAGCTTGAAGAGGGATGAGCCAGACCGAGCCCTTGTGATGTTCCGTCCAATGGTGTCCGACCCCATCTACATTCACAGGAAGTCCCCTCTCCCCCGCTCCAAAAAGATTGGCTCTGTAGAATCCCCATTGCAGCCAGACTTAATCAAGACCTCTGCTGGCAAAGTTCTCTCAGAGAACAACAGTCATACAAGGCCGGGCAGACTGCACACAGAACAGAAGCTCACTACTGGAATGGGGTCTCATTGTGCTGGCCTGTTTAGCACCATGGTGCTGGGAGGCTCCTCCAGCGCACCTAACCTACAAGATTATGCTCGCGCGCACCGTAAAAAGCTGACCTCTTCTGCCTTCTTAGATGagGCCACGCGTGGTTCTGCTGTTAAAAGATTTTCTATCTCATTTGCGCGACACCCAACCAATGTGTTTCCCAGTATGTTCTGTGgCTTTGAGTTGTACTCCATGGTTCCGTCCATCTGCCCCCTCGAGACCCTTCACAATTCACTGTCCCTCAAACAAGTGGACGACTTCCTCGCTTCAATTGCCAAATCCCACGAGTCTTTGCTGGACATTTCTGGGTGCTCACCAGCTGTTCAAGGAAAGAAAGCTCCTTTAAACACCTACACCCCTGCAAAGGTTTTACCCTGCCCGTTCACTCAGTCCCTGGCAAAGAAGTCACCAGAGAAGACTTCACCAGTCAGAGGAGGATCTCCTTCTAGAGCATCCAGACCAGTCCAGACGAACCTGCCTCAGACCAACCTGCCTCTGCAGGGTGCCAGTGGAGACATGCGATCACAGCTGAACTCTACTGAGCAGACCACAGGCAGCAAAGCTGCTACACAACCCAAAACAACAGAACCACAGCAAGCTACAGCTATTAGCACCTCCGCTTCCCCCCTGCCAGCATGTAATAAAGGTCAACTACAGTCAGCCTCACAGGAAACGCAAGAGCGTCAACCATCATCAACCCGCAGTATTCCCAGCTTTACTATCACCACCCACCACAATGTTACTGCTGCTGTTACAAAGGAACATCAGATATCTTCCCTAGAAAACCATTGTCATATCACTTCACAACAAGCCAAGACCCAAGAAGGTCAAAGTGGGGCAAAATCTGTTGTAGACACACCCAAAGACAAGTCCACCAAGCAGACTTCTCAAAAAGAGCGCTGTGATGGCACTGTGCAGCCATGCTGCGCAACAACCGTGACTacgaaagagcaagagttatcaGCAGCTGTGCAGAAGGAGCAGAACGCTGTGGGGGATTTCACAAAGCTGGGCAAGCCTTGAAGAACTCTTAATTAATCAGATACCAATCAGATACCACTGTTACAGCTCAGTTTATACTACCTTTACATACCTTTACACAGCTCATTAGACTAAGACCCTGACACTATCTATTGCCCAGGGATCGTAAGTTTGAATCCTGTGCCATGCTgttttgccatcagcagccagagtctgagagagagcacaattagctaTGCTCTCTTTGTGTGGGTAGAtatgctctctctccctttgtCACTTCCATTGTGTATATAATGATGACTGGCACAGGGTTCTGCTGTCTGATGTGTCggagctggggatctggtgctttcctctTGAGTGCATTGTGATGGATGATTAGTAATGCTGCATTCAAAAAGGGGCAGCAGCTAGCTGACTTTAAATACATCAGTGGAGGCATGTGTCTGTCCTCACTCTACTAATGTTTGGAGCATTGAAAGTGATGGGGCAGTCTTAGAGAGTGAGTGGATTAATTAACTTAGCTAAAATTGGGAAGAAATATAATGATGTGAAGCAAAACATCTACAATGTATCTCTAACCAATGTTCTGCCAAATGTTTCATCTTTTCATATATGACAGTGTTCATGTTTCACTTAAAACACTGGATACACTGTCCCCACAAATTCCAGTTTTCATAAGCTTTAAGAGAATgtgcacaaatataaatacggacaaaataaacacagagaacagATAGAATGCTCATCTCTATTTGAATTCGTATTTGAATTTGTATTTAACTTTACATATAACTGAGCCTTTACATTAAACAGAATGTTATAGGTTTTGATTTATCCCGTTTTTCCCGCAGTGGCTCACTATATGATATCAAATAGACCCGAGATGCCAAAAGGTCTTGCCATGATACGCTTTTGTCCCAGCCTGGGCCGATTCAGCATTTACTGTATGTTCACCAGAGTTAGTTATTTAGAAATTGGTCACTCATATCTTGTATATATGAGTGTTTGAATGTACAATCAGATGTATACAGTCTAATTTGTCTTGATAGGTAGAACATTTTTTGCTAaagctattttaaatattactgaACATTGAATGAATGCAGCACTTTTTTGGGGGCTCCAATTTAAAGGTCCAACATTAAGTGTAATGAAAGtcctattttcatacatatctTTAGGTACACTGTGTTTGCACTTCATTTCATTCTCATCGAACTGGAAAGGAGGACAAATCTGCCTTAgagttttattcatgctttattattttattgttaccAAATCATAATCAAACATGATGATTGTATAGGGAATAAATCTTAAGTGAAACTCCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417572 lncRNA upstream 223363 90240 ~ 92620 (+) True G303228
TU417568 lncRNA upstream 228105 85897 ~ 87878 (+) True G303226
TU417562 lncRNA upstream 254670 59902 ~ 61313 (+) True G303221
TU417557 lncRNA upstream 264943 30569 ~ 51040 (+) True G303218
TU417687 lncRNA downstream 2161 361945 ~ 363425 (+) True G303305
TU417691 lncRNA downstream 6209 365993 ~ 372699 (+) False G303307
TU417692 lncRNA downstream 6209 365993 ~ 372699 (+) False G303307
TU417693 lncRNA downstream 6209 365993 ~ 383873 (+) False G303307
TU417694 lncRNA downstream 6209 365993 ~ 383873 (+) False G303307
XM_022665561.1 mRNA upstream 6475 187642 ~ 309508 (+) True pam
XM_022665558.1 mRNA downstream 7163 366947 ~ 372699 (+) True cunh5orf30
XM_022665573.1 mRNA downstream 22271 382055 ~ 383879 (+) True LOC103024265
XM_007255319.3 mRNA downstream 25719 385503 ~ 389270 (+) True LOC103024567
XM_007255323.3 mRNA downstream 36175 395959 ~ 398846 (+) True LOC103025635
XM_022665565.1 mRNA downstream 42683 402467 ~ 404751 (+) True LOC103031748
TU417690 other downstream 6209 365993 ~ 372699 (+) True G303307
TU417689 other downstream 18965 378749 ~ 383873 (+) False G303307
XR_002649404.1 other downstream 446325 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 533681 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 533976 893760 ~ 893831 (+) True trnam-cau_91

Expression Profile