RNA id: XM_022665559.1


Basic Information

Item Value
RNA id XM_022665559.1
length 4466
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC103030803
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 7635 ~ 24648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCCCGTAGCTGGCACCGTACACCCGGAAACACAAGCGTAGGgtttgaaacaaacaaaagcccCATGCTTTTCTATTGAGAAAAAGGAGAACTGTGGTCTGGAGATTGAAAATGAAAGACGGGAGCGGGAGGACTGTATAAGGGGTTGAAGCTGGTGGTTTCGGGTGTGAATTAATCTGAAGACTGAAGGCAGTAGCGGTCGCTGGGACTCGCGGGTGTTGGTTGGGGAGCTAGCCCGGGTTAGGGCGCTGGTTGTGGGGCTTTGTGGTGAACAGTAGCCGGTGAGGAGGAACAGTTTGTAGCGATGCTGGGAGGTTTATAAGAGGCTCTGAGGCTGCTGTAGATTATTTAAAGTGCAGCGTGTTAGCTTGGCTTCGTGTGGTCGCATTCAGTTCGGAactagtgtgtgttttttccgtGTTTAAGCCCTCAGTTTCGCCCGGCTGGGTGTAGTAGCTAGCAGCTGAAGTTTGGCCAGCATGACCGCCGCTGTGTTCTTCGGCTGCGCTTTCATAGCGTTTGGCCCTGCGTTCTCCCTCTTCATCTTCACCATCGCCAGAGATCCGCTCAGAGTCATCATCCTCATCGCAGGGGCTTTTTTCTGGCTCCTGTCCCTCCTGCTGTCGTCTCTTGTTTGGTTCATTGCCATGAAGGCCAGCAATGCAGAAGACACAAAGGTGCAGACGGGTCTGCTCATATTCGGggtgtttttctcagttctCCTTCAAGAAGTTTTCAGATTCGCCTACTACAGGCTTCTTAGGAAAGCTAATGAAGGTTTGGCAGCCATTAGCGACGAGGAAACCTCCCCCATTTCTGTCCAGCAAATGGCTTATGTGGCTGGACTTGGCTTTGGGATAATAAGTGGAGCTTTCTCCATGATCAACATCCTTTCTGATACTCTCGGTCCTGGCACAGTGGGCATCTTTGGAGACTCTCAATATTATTTCATTACATCAGCTCTGATGACTTTGGCCATAACGCTGCTGCAGATCTTCTGGGGCGTGGTGTTCTTTGACGGTTGTGAGAAGAGCCGCTGGTGGGTCATTGCTGTGGTGGTGTGTCTCCACCTGCTGGTCTCAGGCCTGTCTCTGTTGAACCCTCTCTATGAAGGCAGTCTTCCGCCGGTGTATGCTATCACTGTGCTGATGGCTGTGTGGGCATTCTTCGCTTCAGGAGGCTCCCTGCACAACTTGTCACTGCTCTTTACCCGTAAGAGAAGCGAGGTGGAGTCCTCATAAGTTGTCCGAGTCCTGACCTCTCAGTGAGAGTGAGACGCAGACGGTTCTTTGGAAGGCTGTGTTTGCTGCTTGGAGCATCTTGAAGCAGCAAGTGGAAGAACAGGCACAGCCGCCACTGTTCTCCACTGAAGACGGCCCGGGGGTTGAGTTCGGGTCCCCGACTGCCTTCACCTCAGCCTAACAGGTTATAGGACTCTCACGTCATGCTCATTGTAAAACGCTGTAAATAGCTTGACCTCTATttcacatacaaaaacacacttttaatgagatgtttctttttcaatttcctttttctttgtttttttttttcctttttattcagttttcatCTCCATGATTGCTTTGCTTAAGCTCCTCAGTCATTTCAGAGTAGTATTTAACATTTGAACGAGTGTTCTTTTGATAAATTGCATCACCTagtaaagatatattattttctttctttttttttttttttgttttctttaggaAAATGTGAGTATTGAACCAAGCCTTAGCGAGGCACTTTTACTGGGAGATGGTCAGATAACCTGGGGTCAGATTGTAAATGCTTGCCCAGATTAAGCTTAAAGCATAAATCATAATGCCATAATAAGTGTGTACCTACTGAGCTGGaagatattaaacttgtgtccaGCTACGTGATATATGGAATTACGTCTTATAGGCAAAGATTAATGCTGCTTTGTATTCTCACTGCATCTACATCATGATCCTAATGGATCTCTTGACCAGCTATGAAACCTAGCTGAGATAAATGGCAAAAGGAAAAGAATAGGGAGTTAACAAAATCAGACTGTAAAGGAGCAAATTGACTGGCCCCAGGCAGGTGTTGAGACACTTTAGCTGCTAAAAGGTCCCCTTATTAACTGCACACATGATGTGTGTGACGTGGGAAATTAAAGGCTTTACCAAGTAgcgtgtttatttttattttattttttttaaagcacatttaattGCCATAAATGCATTAATGAGTCCTTTGAACAGAGAGCCTGATGCCCGATTTTCTCATCAAGCTCCATCGAGCACCACATGGGTGGGAATAGCAGTCCAGTCCACTGGCAAATATGTTAAATCAtctactgtgtgtttgtgtatatatatacatatatgtattttatgcggaatcagcttttattttaattttttcttcctcctccttccaTCTAATGCGTTCAATTACACTATTATCATTTTCATTATCACTTCAAGGACACCAGCTGCCCTTTGTGCTGTGTCACCGTGAGTAAAATTTGATAAGATCACTTCATCATTAATAAGTGCAAGACATGTTTTCTTCTGACCGTGACCGTGACAGTAAGTTCTTCAGATTAGAGAGTGTGACTTgcgtgcttttttttaagttgcttGTGGATAATGTAGCAGTTCCCTGCATCTGCACTCGATGCTGATCCTCATTTCTACAATAACAGACTGTTGAGGGCTCAATTTTCGAAATCCAAAACGTTTTTTTATCCACTTTTATCTTGCGTGTGGTTTAGGCGCACACATTCTTGTAGACAACAAGCAATATCTGGATATCGCGGCTCTTTCGGGCGATATCCGTTTGGTCCTACAGCTTGAAACATTGGTGCTTGCCCCCCGTGTCATTTCAGGAGAGCCTTTTTCTTTTTGGTTGTGTTTATCTTGCCGGGAAAGCTCGGCCGTGCGTGGAGCAGTGCTCTTTACGGCCATTTGGTTATTTGACCAACATGAAGCTGCTTTGCTCGCTTtgtggttttatttgtttagagcTGTTTGACTTTCCACCGAGTCGCTGTGCAAGAAAACGTTGCTGCGATGCTTCAGCTTCTAGATCTTTTGTCCATAATCCAAAAATGCAGAGGTGTGTGTAGAGAAGTATTAATGATTTAGTGAAAGAATAACTGTGCTGACCCTGGTTGAAACTATAAATTAACCAGATCAAATGTGTGTAGCTTACTCACTCTGTAATATAAAGGTTTCAGAAAGAGTTCTCAAGAGACATGACTTaggaaaacctttttttttttcttacattttctccccaatttacatggctaattacccaacccactcattaggacccacCTCTTTTATAGCATGGCTcaaagaacacaaaaaaaaactttgtgtaCAGTGTGGAACTGTAGTGCATCATCTCAGatcttccagcatctttcagCATATGAACTGAAGTTCCTTAGGCCTTGTTCTGTTATCTTTCTATGAACTCTTTTTATAAAGTAAGATAATTAACATGTGACTAGTTGTAGTGCAGTACTGATGCTCTCATCTCAATCCAAACAGGGAATTGGTAGCTTAATTTTGGAAATGGAAATGTTACTCTAGTGTAagcaaaatatacatatataattcaAATATGGTCAACATAACACACATGGCACACATTTGGACCTGAATCATTGGAACTGCTTTCTACCCACCTCTGCTAATACAATATCACAGTTATTATACTCCTAAATCTGTTTTAGTTAAAGAACTGTTCTttcctgaaacatttatttaaaggtaCTTCATTCATGAGGCTGACATTAGTAACTGGTTGCACCAGTCTTGCTTTAGCACATTTGTACCTGGCTCACTGTTGACGTACATCATCTTACCATACAGCCTTTGTCTCAGGACGCACTCTGTGATTAATAACAAGCAACTAGATGTTCCAGATTAGTCCGAGGCAGCTCCCTTTAGAGGCACGTCTGGACCTGACTCTGTTATAGCTCTGACTACAATATCTACATATCTCCTCCTTGGACATTGCACTGCCCGTAATATACAATCACATTCAGTATGCACACGTTCTGAAGAAGTTTGTGTTTCAGTTCTGTCATTTCTTTTTCCTGTTCTTTATGTATCTGCTTATGTTAAAGCTCCAGTAAGCGGCTTCTGTTCAGCCCTGTTGTAcctatgtgttttatttatgtctgactttttttggggttttctaAGCTCTGATCTCTTGGAATTCTAGCCGTGTTCTACCTAATGGACCATCCCCTCCCCTCACATCCTCCCCACTGCTTCACATCCAACATCTTTGCAACCGGTGCTCACCTGGATTTCGGACATACTGATGACAAATAATGACTATGTAATGTTTTGATGCTGCTTTATAATGTTTCAACTGAGATATTGTGCCAAACAGGGAAACATGTCAAGATTCTACATGTCACTGAGACTCAATTTGGGTTCAAATAAAAATTCCCTGTGttgat

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06172 APH1; gamma-secretase subunit APH-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417557 lncRNA downstream 5921 30569 ~ 51040 (+) True G303218
TU417562 lncRNA downstream 35254 59902 ~ 61313 (+) True G303221
TU417568 lncRNA downstream 61249 85897 ~ 87878 (+) True G303226
TU417572 lncRNA downstream 65592 90240 ~ 92620 (+) True G303228
TU417687 lncRNA downstream 337297 361945 ~ 363425 (+) True G303305
XM_007255303.3 mRNA downstream 46628 71276 ~ 81191 (+) True reep5
XM_022665561.1 mRNA downstream 162994 187642 ~ 309508 (+) True pam
XM_022665563.1 mRNA downstream 163197 187845 ~ 309508 (+) False pam
XM_022665560.1 mRNA downstream 167963 192611 ~ 309508 (+) False pam
XM_022665562.1 mRNA downstream 167963 192611 ~ 309508 (+) False pam
TU417690 other downstream 341345 365993 ~ 372699 (+) True G303307
TU417689 other downstream 354101 378749 ~ 383873 (+) False G303307
XR_002649404.1 other downstream 781461 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 868817 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 869112 893760 ~ 893831 (+) True trnam-cau_91

Expression Profile