RNA id: XM_022665563.1


Basic Information

Item Value
RNA id XM_022665563.1
length 4265
RNA type mRNA
GC content 0.50
exon number 27
gene id pam
representative False

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 187642 ~ 309508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGACTCAATTAGCCGGGCTGATCCACAGAGATTCAGCGAGCCGAGCCGCGACGGAGGAGCTTCAGCGACAAAACACACAACCAAGGATGTGACAGAAGCCCTGACGCCTTATCTGTGATACGAGACATTCGACCTATAGAGGAAAAGCTGTGGCCCAGCTGTCTCATCTGAACAGCGCTCACCTGACTCTCAGACACGGCCGGCGTCTCTGGCACTTTCAAGCTGAGCGagcgagggagggagtgagtgagaaagagagaggagggggagggagagagagaacctGAGGGCAATCCTACCTCTGTTTGTGTTCGAGGAGGGATTACGGTGGAGGTGAAACAGAGGCTGAGTGCCGCGCTGAAATAGCAGCAGATCTTGGTTGTGCCGCATGGAGCCGGGGCAGGACTGATGCTGTGAGAGGTGCACTCTGCTCAGCTAACCAATCAATCCACTGGCCATCATCCCAGCGCTCTGATCTGACCCATCCAgacacctgagagagagagggaaagagagagagagcagagatggGATTCCTGGTGTGGAGCATGCTCGTACTGGCTCTGGTCAGTCAAAGCCATGGCTACAGTGTCAGAAGCCCACTGGATAGGTTCAAAAgATTTCAGGACACAGCATGGTCTGACCCGAACGACTGCTCCCAGGCCAGGCAGTCTTTGGTCATGTCCAACCCCTACAACTTCTCTGTGGACATCCGCATGCCAGGGGTCGTCCCATCAGCGTCGGACTCCTACTACTGTGTGGCAGTTCCTGTGCCCACATCATGGGAAGCCTATATAGtGGACTTTGTGCCCCATGCCTCCATGGACACGGCTCACCACATGCTTTTATACGGATGTAGAAACCCCACCTCCACCAAAGGTTACTGGGACTGTGGGAGAGAACAGGGCACCTGCGAGGATGAGGCCAAGATCATGTACGCTTGGGCCAGAAATGCTCCGCCCACCAAACTCCCAAAAGACGTCGGATTTAAAGTTGGGGGAGACACCAGAATTACCTACTTTGTGCTGCAAATTCACTATGGTGATATCAAAAATTTCAGAGatCACCATAAAGACTGCTCAGGACTTACTCTAAGAATGACTTCCAAACCACAGCCCTTTATTGCTGGCATGTATCTGATGATGTCTGTGGACACCGTCATCCCTCCAGGAAAGACAGTTACCAATGCAGACATTGCTTGCACTTACTTATCATACCCGATGTACCCTTTTGCCTTCAGGACCCACACACATCGCCTTGgcaaaGTCGTTAGTGGATACAGAATTCGCAACGGACAGTGGACTCTGATTGGGCGCCAGTCCCCACAATTACCACAGGCCTTTTACCCGGTCAGCAATGACATTGAGGTGAAGTATGGAGACACGCTAGCGGCCCGCTGCGTTTTCACAGGAGAGGGAAGGAGCTCTAAAACACGAATCGGtggCACCTCTAATGATGAAATGTGTAACTTCTACATGATGTACTACATGGACAATAAGCATTCCATCCCTTACATGGACTGCATGGACcacggcagcagcagcctgttcAGAAGCATCCCCAACGAAGCCAACGTCCCCATCCCGGTCAGCCCTGACCACATGATGAACATGATGCACGGCTCTAATCAGAAAGACGGCGAGGACGGCGCAGCTCTCCAGCAGCCAAAAAGAGAGCAGGAGGAGGTTCTGGATCAGGGTGACTTCTATTCCCTTCTCTCCAAACTCCTAGGGGAGAGGGAGGACATTGTCCATGTGCATAAGTATAACCCCTCCGAGGCGGCCCGGGCCCAGGCGGATCTGGTGGCTGAAATTGATAGCATAATGCAAAAGAAAGACCTGGTCTGGCCCGGGCCCAGGCTAGGCTTCAGACAGAGGGAGGATGTTCTGGTGAGGGACAGAGTGCACAAGTTTCACCAGTTAGAGTCCACTGTCAGGCCTCCCGGGACCAAGACTATACCAGCCGCCAGACAACCGAGTGCAGGGGTGGCAAAGGCCAAGAAACAAGgaaccCATCTGGAGGAGCTGGCTGACTGGCCCGAGGTTGAGCTGCAGCTGGGCCAGGTGTCCGGTCTGGCTGTGGACTCTGATGATAACCTAGTCATCTTCCACAGAGGAGACCACAGATGGGAAATGAActCATTTGACAACAAAGCGGTATACCAGCAGAGGTCCCTCGGCCCCATTCAGCAGTCCACCATCTTGGTTGTGGATCCAAGCAAAGGCAATGTGCTCAAGGCCTCAGGGAAaaatatGTTTTATCTGCCGCATGGCATTACCACAGATAAGGATAATAATTACTGGGTGACGGATGTTGCTCTTCATCAGGTGTTTAAACTGAGCAAGGACGGAACGGAGAAGCCTCTGCTGGTTCTGGGAGAAGCTTTTAAACCCGGCAGCGACAagagccatttctgcaagccgACCGATGTAGCTGTAGACCCAGAAACTGGAAACATCTTTGTGTCTGACGGCTACTGCAACACAAGAATCCTCAAATTCTCACCGGAGGGCAAATATCTCTCTGACTGGGGAGCAGGCTCATTGGACCGGCGACGTCGAGTTCCCTTCCAGATCCCCCATAGCCTGGCCTTTGTGCCGGAcaagcgggagctgctggtggcTGACCGAGAGAACGGCCGTGTACAGTGTTTCATGGCCGACACCGGCGAGTTCGTGAAGGAGATCAAGAGAGACGAGTTTGGAGGAGAGGTGTACGCTGTTTCATACGCACCTGTACAAGGTGGGCTGATATATGTAGTCAACGGAGAATCTCCATACGGTCAATCTGCTCCACTCCGAGGCTTCGTGCTCAATTATTCAACCAAGGAGATCCTGGACACATTTGCCCCTGACACACAGaAGTTCAAAATGCCTCACGACATTGTCGTCACAAAGGATGGGAGTGTCTACGTCGGAGATGCCACCTCAGACTCGGTTATAAAATTTGTACCATCTGAAAaagcaGAACATCGTTCAGTTAAGAAAGGAGGAATCGAGGTGCAGGAAATTGAAGAAACAGAGACGTTCGTCCAGGCCAATTTGAAGCCCATCCACAAGCCGCTGGCTCAGTCACCCCAAGCCACAGTGCCAGAGCTCCCAGAGGTTGCTGAGAAGCAGCCAAACCCAGCACAGCAGGCCAAAGCTCTggaagacaaagaaaaagagaaggagacgATTGCGAACAAGGCCAAATCTCAGGGTCTTTCTCCAGCAGTCATCACCACTCTGCTCCTGCTCCTGCCCCTGGTGCTGGTCATCGCGATCGGCGTCTTCGTCCGCTGGAAGAAGAGCAGGATGTATGGAGATCATGAGGTGAAGCTGGAGCCGTCAGGATCCTCAGGAGGAATCTTGGGTAAACTCAGAGGCAAAGCTGCAGGGACGTTAAACTTGGGGAATTTCTTCGCCACTCATAAAGGCTACACACGGCAGGGCTTCGACCGACTTAGCACAGAGGGCAGCGACCTGGAGAAGGACGACGAGGACGCCACCGACTCGGAGAACGAGGAGTACTCGGCCCCGCCTCCCCCGGTGTCCTCATCCCAATGAGCCGTCCCGCTCTAAACCCCTCCCCCTCCGTCCCAAACGCTCGCACCGTCAGGATGTACTGCAATCATATAACATGTAACTGTTCGTAATGGCtgccaatatattttatttatttgtgcgaAAACCTTTTTCTCAGTAGGGATGTatgactgccactttaatttatgattttaagGGACCATGTAGATGAGGAGCCAAACACTGGTAGATTTAAGTGTAAAGCTATCTGGTTATTTTTAATTCTGGGAGGTGGAGGAACGAGGtagatctgtttttattttatctcttcttttttatgtaattgacAGATTCTTCCAGTAATTTATCATCTCTTTTATCAAGCTCttctgttgttcttttttttttttatgtttttctggtAACTGGTCCAGACGTTCGTTTGATCTCCTATCTGTACATTTGTGCCTTTTTGATTCTGTATTTCTCGCCTTCTGCAGCACCTATATTACTACAGATGTGCCACTTATTTCAAAGCGCTGCTACTGTCAcctgtattttgttttctgttgtgccgcattcagaaaagaaaaaaaaagaggattaTTATGATGTATCTAAATCTGTATTTACTACATTTTCCAAGCAGGATGTGAGATGTGTCTGATATTTGTTGTGACATAACTAAGGTTTTATTGCAAGAATACTATTTTCAGTAACAATGTTATTTGTGTAATAAAGTGTCTGCAAAGCATCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0004504 peptidylglycine monooxygenase activity molecular_function
GO:0005507 copper ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417572 lncRNA upstream 95225 90240 ~ 92620 (+) True G303228
TU417568 lncRNA upstream 99967 85897 ~ 87878 (+) True G303226
TU417562 lncRNA upstream 126532 59902 ~ 61313 (+) True G303221
TU417557 lncRNA upstream 136805 30569 ~ 51040 (+) True G303218
TU417687 lncRNA downstream 52437 361945 ~ 363425 (+) True G303305
TU417691 lncRNA downstream 56485 365993 ~ 372699 (+) False G303307
TU417692 lncRNA downstream 56485 365993 ~ 372699 (+) False G303307
TU417693 lncRNA downstream 56485 365993 ~ 383873 (+) False G303307
TU417694 lncRNA downstream 56485 365993 ~ 383873 (+) False G303307
XM_007255303.3 mRNA upstream 106654 71276 ~ 81191 (+) True reep5
XM_022665559.1 mRNA upstream 163197 7635 ~ 24648 (+) True LOC103030803
XM_022665566.1 mRNA downstream 6474 315982 ~ 359784 (+) False ppip5k2
XM_022665567.1 mRNA downstream 6474 315982 ~ 359784 (+) True ppip5k2
XM_007255307.3 mRNA downstream 6474 315982 ~ 359784 (+) False ppip5k2
XM_007255312.3 mRNA downstream 6475 315983 ~ 359784 (+) False ppip5k2
XM_007255308.3 mRNA downstream 6475 315983 ~ 359784 (+) False ppip5k2
TU417690 other downstream 56485 365993 ~ 372699 (+) True G303307
TU417689 other downstream 69241 378749 ~ 383873 (+) False G303307
XR_002649404.1 other downstream 496601 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 583957 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 584252 893760 ~ 893831 (+) True trnam-cau_91

Expression Profile