RNA id: XM_022665565.1


Basic Information

Item Value
RNA id XM_022665565.1
length 751
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC103031748
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 402467 ~ 404751 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACTAGAGGATCCACAGAGGAGCACATTGTGAAGTCTCAGCTTTTAGCCTTTATTCTGCTAGTGGGCGTGGCCAATGCCAAACATTTTACCAGATGTGAGTTGGCGAGGACGTTGCAGGCAGCTGGGATGGACggatattttaaaagaaaTACCTGGCTACTACCTGCAGGGACGTGCTTGGCGAGTACTGCGTCCAGCTACAACTCTCAGACCACAACCCGTAACTCTGACGGCTCAACAAGTTACGGCATTTTCCAGATTAACAACCGGCGGTGGTGCTCCAGTGACCAGGTCCCCAGCTATAACAGCTGCCGGATATCCTGCAGCCAGCTGTTGACTGATGACATCACTGCTGATATTGAGTGTGCCAAGACTATTGCCAACCAGCAGAGCATTTTATTTTGGCCAGGCTGGCAAGCCAACTGTCAAGCTCGGGAGTTGGGCCAGTACATCGCTGGTTGTGAACTTTGAATGAAGACCACAGAGTGATGAACTTCAATGCACTGGATCTTATAGAAGAATGAAAGGAAAGACAAATGGACTAATAGTTAATATGTGAATGAACCAATATAATAAAAGTGTTGAATAAACAGCCTGACACTGCTGTTATTTACTGATGGGTTATTATCAGAAAACTGTGCCTTTTGTTccttaaaacttaataaaaacttaataaaaatgtacttaagATTTCAAATTGGCTTGACCATTCATCATATTTATAGACATATATCATATTTTACATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417693 lncRNA upstream 18594 365993 ~ 383873 (+) False G303307
TU417694 lncRNA upstream 18594 365993 ~ 383873 (+) False G303307
TU417691 lncRNA upstream 29768 365993 ~ 372699 (+) False G303307
TU417692 lncRNA upstream 29768 365993 ~ 372699 (+) False G303307
TU417687 lncRNA upstream 39042 361945 ~ 363425 (+) True G303305
TU417748 lncRNA downstream 35671 440422 ~ 442217 (+) False G303340
TU417744 lncRNA downstream 38437 443188 ~ 446559 (+) True G303340
TU417753 lncRNA downstream 39108 443859 ~ 445869 (+) True G303341
XR_002649407.1 lncRNA downstream 146619 551370 ~ 567446 (+) True LOC111191252
TU417857 lncRNA downstream 387601 792352 ~ 795312 (+) True G303418
XM_007255323.3 mRNA upstream 3621 395959 ~ 398846 (+) True LOC103025635
XM_007255319.3 mRNA upstream 13197 385503 ~ 389270 (+) True LOC103024567
XM_022665573.1 mRNA upstream 18588 382055 ~ 383879 (+) True LOC103024265
XM_022665558.1 mRNA upstream 29768 366947 ~ 372699 (+) True cunh5orf30
XM_007255316.3 mRNA upstream 42683 315983 ~ 359784 (+) False ppip5k2
XM_022665569.1 mRNA downstream 27836 432587 ~ 548171 (+) True syk
TU417689 other upstream 18594 378749 ~ 383873 (+) False G303307
TU417690 other upstream 29768 365993 ~ 372699 (+) True G303307
XR_002649404.1 other downstream 401358 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 488714 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 489009 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 489211 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 489426 894177 ~ 894248 (+) True trnam-cau_93

Expression Profile