RNA id: XM_022665569.1


Basic Information

Item Value
RNA id XM_022665569.1
length 4297
RNA type mRNA
GC content 0.45
exon number 16
gene id syk
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 432587 ~ 548171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCTTCACGCAGTGTGTGAAGAGGAGCCTGTGATGTTCACAGAGCTGCGCGTGGATGTGTCTGGATGTAGGCCAAGAGCTCACGTGCGACCGAGATCACGCAGATTTCTGGGGACAGAAGGAGCTAGGCGAGCAGTCATGGCGGATAAAGTGCCGTCTTTGTCGTTCTTCTACGGGAACATCGCTCGAGAGGAGGCGGAAGAGTACCTGAGGCATGCAGGTATGAGCGACGGCCTCTACCTGCTGCGGCAGAGCAGGAACTACCTGGGGGGCTTCGCTCTGTCTGTGGCCTACAACCGCCAGTGCTACCACTACACCATAGAGAAAGAGCTGAACGAGACCTTTGCCATCGTGGGCGGAAAATCCCACCGGACCCCGCAGGACGTGATCGAGTACCACTCGCAGGAGTCTGACGGACTCATCTGCCTGCTGAAGAAACCCTGCAACCGGCCGCGCGGCGTGCAGCCCAAAGTGGGGGCTTTTGAGGATGTGAAGGAGAAGCTGATCAGGCAGTACGTCACACAGACCTGGAACCTGCAGGGGGCTGCACTGGAGCAGGCCATCATCAGTCAGAGACCCCAGTTGGAGAAGCTGATTGCCACCACAGCACATGAGAAAATGCCCTGGTTCCACGGCAACATCACACGAGAAGACTCAGAGCTGCGCTTACACGGCAGCTCACGCGTCAACGGCAAGTTCCTAATCCGGCAGCGAGACACCAACGGCTCCTTCGCGCTCTGCCTCTTACACAACCACCAGGTCATGCACTATCGCATAGACAGAGACAAAGCCGGAAAACTCTCCATTCCTGACGGGAAGAAGTTTGATACACTGTGGCAGCTGGTGGAACATTATACCTACAAACCTGACGGCCTGCTGAGAGTCCTGACAGAAGCCTGCCCACACCCCGCCTTCAGCCACCAGTCTGCTGACGGCCGACCTGGAGTTCCTCCGAATCATCCACAGACAGGGCATTTTCCAGGACTTCTCAACAGACTCAAATCCTACTCCTTCCCCaaacctggccaaaaaaagGAGGGAGCTTTTAGCGGCATTCAACTCATCAGACGTCTGTTACCGTCCTCCATCTCTACCAGAAATACATTGCCTTCCCCGACAAGCAACTCCGCCAGCAACAACAATCCTTATGAAAGGCCAAAAACTACAGAAATGCCTATGGACTCGGAGGTATACGAGAGTCCGTACGCCGACCCTGACGAACTGCGCACCACCACTGTGGATCGTAACCAGCTGTTCCTGGAGGACGGGGAACTGGGCTCAGGAAACTTCGGAACTGTTCTCAAAGGAATCTACAAGATGAGGAAaaAAGAGAAACCAGTTGCAGTGAAGATCTTGAAGAATGATGAGAACAATGAGGCAGTGAAGCAGGAAATGCTGCGGGAGGCTGAGGTCATGCAGAAGCTGGACAACCCCTACATTGTTCGTATGATCGGCATCTGTGAGGCGGAGAACCTTATGTTGGTGATGGAGCTGGCCGAGTTGGGCCCACTACACAAATACCTGCAGAGAAACAAGCACGTCACCTCAAAGAACATCACAGAGCTTGTTCATCAGGTGTGCATGGGGATGAAGTACCTGGAGGAAAGCAACTTTGTACACAGAGATCTGGCAGCCAGAAACGTTCTTCTGGTCACCCAGCACTACGCCAAGATCAGCGACTTCGGCCTGTCCAGAGCCCTTGGAGAAGAACGCATTTATAACTGCTTATGTCCTGGTAAGTGGCCTGTAAAGTGGTACGCTCCAGAGTGCATGAACTTCTTCAAGTTCTCCTGTAAGAGTGACGTGTGGAGCTTCGGGGTTCTGATGTGGGAGGCTTACTCATACGGACAGAAGCCATACAAGGGGATGAAGGGCAATGAGGTGATCCAGATGGTTGAAAGAGGGGAGAGAATGGCTGCTCCAGCCGACTGTCCACCTGAGATGTATGAACTCATGAAGAAATGCTGGACGTACAAgGTGGATGATAGGCCTGGCTTTGCTGTGGTTGAGCCCAGACTGAGGGAGTACTATTATGATATTTCTCAATGATCAGAGCTCATGCTGGAAGACGACCCTCAGCTGTTTGTACATGGAGTTTAAATCGTTTCAGATTTTAGGCCCACTTTTTCAAACCTCAATTTTTAACATAATTATGCTTGAAAAGTCTGAtggaggaaaaaataagaatggAACTAGAAGGACTgaacattttttcattatttaactgAGAGCTTCTGcggagatgttttttttttttttgtaatgcacCTCAAGCCAAAGTTATGATCAGCAACTGCTTATCTCGCCAGTTTTCCTATAGCAATACGCTGTttataataatatcagtttctGTTGTAtcattttttctacatttatacTTCTCTTCAGCTTAGCAATATGATGCAGTGTAATGGAGTAGCGGATTTTGAAATGTAGCTGTTATAGTTTTGGCTGAAATCACAGCTGTGCGGTGCTAAAGGAGAATAATGAAAACTGGAGGCTGTGACAGGTTTGTGGAGAATGAATTTCAGCTGCAAAAGCAACAGCAGCGTGAAGTGTGACTGGACACCAGCAGACAGTGTGGACATTTTGAAGACGTTCTCACAGTGTTTTGAACAAGTAGTTAGTGATGGGTTTTTTTGAAGATGCCTGAATTATTCATAATGTAACACATTCAACAAAAGCCTGGTGTAAAAAGCTAAAGACTGCTGCAATTAATGGCAGTCCAAACTTACTGACTGTGTTTCTGAGGTGTACAGTGTAGCATAATGCTGTGTTTTCCTTCAACAGTATTCCAGTTAAACATTAACTGTTAAAGGAGATGGAAAGTACTGTGTGTCCATCTGATTTAATGCGGTACAAATGAATGGAAATGATAAAATAGAACTGTATAATATTACTGATTTGACTACTGTTGATGTTCAGTGCATCCATCATGGATTCTGAACTCGGGGTTATTGAGGCTTTCCCGAAATTCTGAtaagaaatcagactttttgGGGCGTTCCAGTTAAAGCATCCATATGTAACTTGGTAATTCCAACTGCAAAGTTGAAATAGAATGCAGCATAAACCCATACtcaacagtaacagtaatagtAATGATAGagtcaaataaaatcaaagcaaATCTGAAAGCGCCTGTTATTGAGCTGATTAGTTGGGTCAGGTGTGTTGGCAGGAGCAGGAAAAGCAACTACTACTTAACAAACTATCAAAATAGTTAGGTTTTGGGTTTAGGTACTGTTGGGTACGGGTAGGCTGGTCATCTGCATATCTGCTTCTACTATATTGCCAGAAGTATCCACTCGCCTGCATTACATTTGGAAAGTGTAAGGCTTGGGTGGAGCTCTCTACGCTGTACTGTTCCTGATCTAATCTGTAGCTACATGacgtttggaggtctgtagtggtTGACTTGGAGACCTCTGTGCTCTTTGCTTCTCAGTATCCTTTGCTTTTGTTCCCAGTTGCTTCCACTtatttgttataatatcacttacagttgactgtggaatattaaATAGTGAGGAAagttcacgactggacttgttgtacAGATGCTGCATCCGATCCCGGTACCACACTGGAGTTTACTAAGCTCCTAAGAGCTGAGACcaattatttcagtaatgtttgtagaagcagccTGCAGCATGACTAGTCTgtgcttggttttatataataccTGAGGGCATGGAAATGATTGAAATGATCTCAATGAGTGAGTTAAAACTTTTGGCACTAtagtgtatgtatttgtgtgcaAATGACCATCAAAAATAAAGTGCTTCCAAAATCATTTCCTCTGTTGGAAATGTAATTGATGTATACTTTGCAGTACTGCCTAAGTATTGCCCATCTTAAATACTGTGTTGACTCGTTTCTTATATCCGTTCCCAATACAAGTTCTACATTATGCAAGTTTCAGTTGTTCATTTCTTTCTGATCTGTTTCCtaaacaaattttaaaaagtatgtaagaGATTTGTATCCTCTGGTGATCGTGtgataagtgtttttcttttatacaaTGAGAAATTTAGGTTAGGACCTCCCTCTCCCCCAATAATTAAGTGCAATGGAAAtgtggaaaatgaaatgaaaatactGTGGAATCCTTCCCTGATCTAACCAGCGCTGTCGCTCTTCTTTTTGCACACCTCCTCTGGTCTTCCATGCTTCCATGCAACAGAATTTGAATGCAAACTTGTGATGTGTTGAGTTGATCTTTGTACAAACAGCTCTTTCAAGCCGTTTGTCcaataattcataaataaagaactattttaaatca

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K05855 SYK; spleen tyrosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417693 lncRNA upstream 48714 365993 ~ 383873 (+) False G303307
TU417694 lncRNA upstream 48714 365993 ~ 383873 (+) False G303307
TU417691 lncRNA upstream 59888 365993 ~ 372699 (+) False G303307
TU417692 lncRNA upstream 59888 365993 ~ 372699 (+) False G303307
TU417687 lncRNA upstream 69162 361945 ~ 363425 (+) True G303305
XR_002649407.1 lncRNA downstream 3199 551370 ~ 567446 (+) True LOC111191252
TU417857 lncRNA downstream 244181 792352 ~ 795312 (+) True G303418
TU417859 lncRNA downstream 244181 792352 ~ 794940 (+) False G303418
TU417843 lncRNA downstream 257542 805713 ~ 808564 (+) False G303413
TU417844 lncRNA downstream 257542 805713 ~ 808564 (+) False G303413
XM_022665565.1 mRNA upstream 27836 402467 ~ 404751 (+) True LOC103031748
XM_007255323.3 mRNA upstream 33741 395959 ~ 398846 (+) True LOC103025635
XM_007255319.3 mRNA upstream 43317 385503 ~ 389270 (+) True LOC103024567
XM_022665573.1 mRNA upstream 48708 382055 ~ 383879 (+) True LOC103024265
XM_022665558.1 mRNA upstream 59888 366947 ~ 372699 (+) True cunh5orf30
TU417689 other upstream 48714 378749 ~ 383873 (+) False G303307
TU417690 other upstream 59888 365993 ~ 372699 (+) True G303307
XR_002649404.1 other downstream 257938 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 345294 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 345589 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 345791 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 346006 894177 ~ 894248 (+) True trnam-cau_93

Expression Profile