RNA id: XM_022665573.1


Basic Information

Item Value
RNA id XM_022665573.1
length 523
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC103024265
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 382055 ~ 383879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTCCTCAAGCGGTATGTATACGGAACACTACGGCATCTTCCAGATCAACAACCGCCGGTGGTGTAGCGATGGCAAATTCCCCGGCAAAAAAGACTGTCCATTCACCTGCAACCAGCTGTTCTCCCTCCAGAATAGCATCGATTGTGCCAAGATCATAGTGCAGAAGCTGGGCATGACACCCTGGAAAGGCTGGCGGTACGAATGTTGGGGCCAAGATGTGAGCAAGTACGTCGCAGGCTGTGGCGTGTAAATGAAGACCCCGGAGTGATGCACCCAAACGAGATGCCTCTTCAATTCCACACTGTTTCAATTCTTTAGCCAGTCTTTTAACAGAGTATTTACCCAGAAACTAGGATAAGGATAAACTAGGATCGTTCCATTGTTTTCATAAAGAATGAACCATTTAAACCTAACAAACATGTACTCCAACattttgatttctgattttgctaaacATACTTGTTTCCCAAAACTGCCATTGCCAAactgtattataaaaaataaattgtataataaaaaca

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417691 lncRNA upstream 9356 365993 ~ 372699 (+) False G303307
TU417692 lncRNA upstream 9356 365993 ~ 372699 (+) False G303307
TU417687 lncRNA upstream 18630 361945 ~ 363425 (+) True G303305
TU417572 lncRNA upstream 289435 90240 ~ 92620 (+) True G303228
TU417568 lncRNA upstream 294177 85897 ~ 87878 (+) True G303226
TU417748 lncRNA downstream 56543 440422 ~ 442217 (+) False G303340
TU417744 lncRNA downstream 59309 443188 ~ 446559 (+) True G303340
TU417753 lncRNA downstream 59980 443859 ~ 445869 (+) True G303341
XR_002649407.1 lncRNA downstream 167491 551370 ~ 567446 (+) True LOC111191252
TU417857 lncRNA downstream 408473 792352 ~ 795312 (+) True G303418
XM_022665558.1 mRNA upstream 9356 366947 ~ 372699 (+) True cunh5orf30
XM_007255313.3 mRNA upstream 22271 315983 ~ 359784 (+) False ppip5k2
XM_007255319.3 mRNA downstream 1624 385503 ~ 389270 (+) True LOC103024567
XM_007255323.3 mRNA downstream 12080 395959 ~ 398846 (+) True LOC103025635
XM_022665565.1 mRNA downstream 18588 402467 ~ 404751 (+) True LOC103031748
XM_022665569.1 mRNA downstream 48708 432587 ~ 548171 (+) True syk
TU417690 other upstream 9356 365993 ~ 372699 (+) True G303307
XR_002649404.1 other downstream 422230 806109 ~ 806364 (+) False LOC111191247
trnar-ccu_63 other downstream 509586 893465 ~ 893537 (+) True trnar-ccu_63
trnam-cau_91 other downstream 509881 893760 ~ 893831 (+) True trnam-cau_91
trnam-cau_92 other downstream 510083 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_93 other downstream 510298 894177 ~ 894248 (+) True trnam-cau_93

Expression Profile