RNA id: trnam-cau_93


Basic Information

Item Value
RNA id trnam-cau_93
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_93
representative True

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 894177 ~ 894248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417863 lncRNA upstream 80455 812879 ~ 813722 (+) True G303421
TU417862 lncRNA upstream 80898 812879 ~ 813279 (+) False G303421
TU417845 lncRNA upstream 84415 807103 ~ 809762 (+) False G303413
XM_022665569.1 mRNA upstream 346006 432587 ~ 548171 (+) True syk
XM_022665565.1 mRNA upstream 489426 402467 ~ 404751 (+) True LOC103031748
XM_007255323.3 mRNA upstream 495331 395959 ~ 398846 (+) True LOC103025635
XM_007255319.3 mRNA upstream 504907 385503 ~ 389270 (+) True LOC103024567
XM_022665573.1 mRNA upstream 510298 382055 ~ 383879 (+) True LOC103024265
trnam-cau_92 other upstream 144 893962 ~ 894033 (+) True trnam-cau_92
trnam-cau_91 other upstream 346 893760 ~ 893831 (+) True trnam-cau_91
trnar-ccu_63 other upstream 640 893465 ~ 893537 (+) True trnar-ccu_63
XR_002649404.1 other upstream 87813 806109 ~ 806364 (+) False LOC111191247
TU417689 other upstream 510304 378749 ~ 383873 (+) False G303307

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073615 False 5511 mRNA 0.39 7 NC_007120.7 48123025 ~ 48135809 (+)
grasscarp (Ctenopharyngodon idella) TU52636 False 945 lncRNA 0.44 2 CI01000006 9190362 ~ 9282678 (+)
rainbow trout (Oncorhynchus mykiss) TU2729827 True 1625 lncRNA 0.44 1 NW_023494039.1 30501 ~ 32125 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1210 True 72 tRNA 0.60 1 NC_053132.1 25316221 ~ 25316292 (+)
striped catfish (Pangasianodon hypophthalmus) trnam-cau_48 False 72 tRNA 0.60 1 NC_047619.1 11400392 ~ 11400463 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_2688 True 72 tRNA 0.60 1 NW_025047891.1 799934 ~ 800005 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_1210 True 72 tRNA 0.53 1 NC_056704.1 13453788 ~ 13453859 (-)
mexican tetra (Astyanax mexicanus) trnam-cau_48 True 72 tRNA 0.60 1 NW_019170817.1 1228 ~ 1299 (+)