RNA id: TCONS_00000011


Basic Information

Item Value
RNA id TCONS_00000011
length 1671
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_000003
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25585 ~ 27255 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAAGTGCTGTTCAGCAGCGTAACTACAGAAATACCTCTACAACACAGCGATAGATACCTGTGTTTACCTCAGTTTACCTGTGTTTACCTCAGTTTACCTGTGTTTACCTCAGTTTACCTGTGTTTACctgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttatctgggtttatctgtgtttacctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgcgtttacctgtgtttatctgcgtttacctgtgtttatctgcgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatCTGCGTTTACCTGCGTTTAcctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttatttgtgcttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatCTGCGTTTACCTGCGTTTAcctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttatttgtgcttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatttgtgcttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctttgtttatctgtgtttacctgtgtttatCTATGTTTACCTTTGTTTACCTGTGTTTATCTATGTTTGCCtgtgtttacctgtgtttatctatgtttacctgtgtttacctgtgtttacctgtgtttatctgtgtttaccTGTGTTCACTGCAACTCACACTGCTGTTGAGCTCTGCTGTGCTGTAGCTGAACTGTGTTACTGCAGTGTGTTGCACCTGTACTGTATTAAACTGCAGATATTCTCTATGTTCTGCTGCTGTGCTTCACTTTACTGCAGTTATTGTCGGTCAGGGAATTTCTCttattaatattcagtttctctgCTTTTACTCTGGAAACTCCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000161139

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003000 lncRNA upstream 5254 18716 ~ 20331 (+) False XLOC_000002
TCONS_00000009 lncRNA upstream 5254 18747 ~ 20331 (+) False XLOC_000002
TCONS_00000007 lncRNA upstream 5622 18716 ~ 19963 (+) False XLOC_000002
TCONS_00000004 lncRNA upstream 10522 14167 ~ 15063 (+) False XLOC_000001
TCONS_00000013 lncRNA downstream 559 27814 ~ 31905 (+) False XLOC_000004
TCONS_00003001 lncRNA downstream 559 27814 ~ 32353 (+) False XLOC_000004
TCONS_00000014 lncRNA downstream 594 27849 ~ 31321 (+) False XLOC_000004
TCONS_00000015 lncRNA downstream 4532 31787 ~ 32353 (+) True XLOC_000004
TCONS_00000017 lncRNA downstream 9472 36727 ~ 38446 (+) True XLOC_000005
TCONS_00000008 mRNA upstream 2196 18716 ~ 23389 (+) False XLOC_000002
TCONS_00000010 mRNA upstream 2412 18786 ~ 23173 (+) True XLOC_000002
TCONS_00000001 mRNA upstream 9212 11822 ~ 16373 (+) False XLOC_000001
TCONS_00000012 mRNA downstream 435 27690 ~ 34330 (+) False XLOC_000004
TCONS_00000016 mRNA downstream 9297 36552 ~ 39191 (+) False XLOC_000005
TCONS_00000018 mRNA downstream 82543 109798 ~ 119146 (+) True XLOC_000006
TCONS_00000019 mRNA downstream 92705 119960 ~ 125246 (+) True XLOC_000007
TCONS_00000020 mRNA downstream 99995 127250 ~ 134079 (+) False XLOC_000008
TCONS_00000003 other upstream 12328 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 232785 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 486758 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 510334 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 549189 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1191436 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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