RNA id: TCONS_00000096


Basic Information

Item Value
RNA id TCONS_00000096
length 555
RNA type mRNA
GC content 0.58
exon number 2
gene id XLOC_000047
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2222363 ~ 2240119 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAATGCGCGAGTATAAGGTGGTGGTGCTCGGCAGCGGAGGGGTCGGCAAATCCGCGCTCACCGTGCAGTTCGTGACCGGGACCTTCATCGAGAAGTACGACCCGACCATCGAAGACTTCTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCCGGCACCGAGCAGTTCGCGTCCATGCGGGATCTCTACATCAAGAACGGGCAGGGCTTCATCCTGGTCtacagcctggtcaaccagcagAGCTTCCAGGACATCAAGCCCATGAGGGACCAGATCATCCGGGTCAAGAGGTATGAGCGCGTGCCTGTGATTTTGGTGGGCAATAAGGTGGACCTGGACAACGAGCGCGAGGTTTCGTCGAGCGAGGGTCAGGCTCTGGCTGAGGAATGGGGCTGTCCGTTCATGGAGACTTCGGCCAAGAGCAAGACTATGGTGGACGAACTGTTCTCGGAGATCGTCAGGCAGATGGACTACGCTTCTCAGCCGGATAAAGAAGACCCGTGCTGCTCCTCCTGCAATATACAATAA

Function

GO:

id name namespace
GO:0032486 Rap protein signal transduction biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-116 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Rap protein signal transduction and negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be located in recycling endosome membrane. Predicted to be active in plasma membrane. Orthologous to human RAP2A (RAP2A, member of RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000058877

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002808 lncRNA upstream 198718 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00003015 lncRNA upstream 216731 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00000077 lncRNA upstream 322520 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 429840 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 490879 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000101 lncRNA downstream 56472 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1478547 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2357941 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00002809 lncRNA downstream 2661341 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00003018 lncRNA downstream 3071360 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00000093 mRNA upstream 4502 2129175 ~ 2217861 (+) False XLOC_000046
TCONS_00000086 mRNA upstream 6001 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000085 mRNA upstream 6001 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000084 mRNA upstream 6001 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000083 mRNA upstream 6001 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000097 mRNA downstream 20288 2260407 ~ 2299553 (+) False XLOC_000048
TCONS_00000103 mRNA downstream 61842 2301961 ~ 2394973 (+) False XLOC_000050
TCONS_00000105 mRNA downstream 61855 2301974 ~ 2409126 (+) False XLOC_000050
TCONS_00000106 mRNA downstream 61855 2301974 ~ 2444210 (+) False XLOC_000050
TCONS_00000107 mRNA downstream 81265 2321384 ~ 2394768 (+) False XLOC_000050
TCONS_00000094 other upstream 7966 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000069 other upstream 428992 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 490037 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 499206 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 503836 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000098 other downstream 32142 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 35486 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 46730 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 61839 2301958 ~ 2302623 (+) False XLOC_000050
TCONS_00000104 other downstream 61853 2301972 ~ 2441683 (+) False XLOC_000050

Expression Profile

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