RNA id: TCONS_00011883


Basic Information

Item Value
RNA id TCONS_00011883
length 2056
lncRNA type antisense_over
GC content 0.35
exon number 3
gene id XLOC_006019
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27363949 ~ 27391937 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGTTGGATCAGGTTTAAATTCCAGCGCAGCAATCGCAGAGCTCCTCCGAAACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGGTGCAAACACGCTTCCAATCCTATGCAGTTGCATTTTAAACATGCCGATCCATGCAAGACTGAAAGAGGTGCTCATTCAGTACCATAACCCTTCATTATTTTAAGACGCGGCCAAGCATGCTCATGTCATGCTCCAGAGACTCTCCTTCTGGGAGGATTTTCTCTCTGCCTTTTCTGTCCACTGAAATCTGGCCCTTGCCCAGTATCTGATCCACCCTGAGAGGAAACAAACAGCGATTTTGAGCATATGATGAGGATGTACACCTTTACACTGTTGTTCCTCAAGCTCGAGCATGGCACAGCAGGAAAAGGCTGGACTTCGGTTAGTGAATAAGAACTGATGTTAGTGCATCTCCATCAGCTACGTTTTCTGTTAAAAGACAGTAAGAAAGACATGTTGACATATATGTTTTGTAAATTATACAAGTACAGGACATTCAGAGCATTAAATGTTATTTGCTACATTTAAATATTGGCTGAATCTGATCTACCTTTACTAGTTTACATCTTTATGTAGTGCTAATCAAATGATTTTCATGCATATATGCATATTAGTTACAGctttcataaaatattttagatttcttGTTTCAGTATGTGATTCACTATTGCCAGGGGttagaaaaaatgttttatgcttCCTTGTCTTTTTAATTTTGTCATGCAAGAACCATTTGAACAAACATTAATCAGGTGAACCAATCAGAGTATGTGCAACACAATTAATATTCATCCCCTGACTGAAAAATCACAACAATATTTTAATCAGTTTGGAGTCCAATGATGAAGATTATGTGTAATGCAATAAAAAAGAAGTCTGTCTACAACCCACATACTGTATATTAGTGGTTCTCAACTACCTTGAGATGAGATAAAAATCATGAAATATAAAAGCATTATTTAGAAAATACCtaatactaaaaatattttcttaagtTAGAAGGAATGTTAGACTTAAAATTATTTAACCAGTTAACCTAACATTTTGGACTCAACAAAAATCAGTTTTGGAGATATTGACAGATTAGACATAAATTAAATAGTACATTTAAGACGGGTAGTCGAGCTCCAGACAAAGACTACAATTTATCAGTAATTCTTAGAGCATATGGCAGAGAGCATGAGGTTTCAGTGTATTATAAATGGCTAATGGAAAAGATGGGCTGTAGTTTCCATTCTGCGCTTAAAACAGTTTGGTGTAAAAATCTAAACAGTATATTTAGCAATCAACATTGGAAGAAAATTTGCCAAAACTGTAaacttaatgttaaaatgtttaggAGTACGCctaatgcaatttaaaatatagaaTTTTTTAAATTGGACTCTGAGTAGGTTTTTCAGGCTTGGGTTGACTCTGCTGAAGATAGAGATGTGAGAGCGAAGAAAAAGACTTGATGCATCCCCTTTGGTCCTGTTCTAAAATACAGGAATTCTGGGCACAAGGCACAATTACATTCAGGATGTTTCTGGATGCTGTTTTTCGATTTGTTCTAAACTATATGTACTGGGACACCTTCTTGTGTTGGGGTCTGGTGTGAAGATGTCTGAGTGGATTCAAATAAGTATTATGATTGGAAGACATATCATTATGAGGGGATGGTGTTCAGCAGGTCCACAATCATTTCAAGAATGGGTTACAGAATTGGGGAAGGTGACAGCATATGAAAAAattacatacacagttgaagtcagaattattagcccccctttgaattttttttctttttaaaatatttcccaaatgatgtttaacagagcaaggatattttcacagtatgtctgataatatttttttctactggagaaagttttatttgctttatttgggctagaataaaatcagttttatttttttaaacacattttacagtcaaaattattagcccctttaagctatatattttttgatagtctacagaacaaaccattgttatacaatagcatgcttaattaccctaaccc

Function

GO:

id name namespace
GO:0007281 germ cell development biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011882 lncRNA upstream 1351 27363949 ~ 27367958 (+) False XLOC_006019
TCONS_00011881 lncRNA upstream 2544 27363949 ~ 27366765 (+) False XLOC_006019
TCONS_00011878 lncRNA upstream 45307 27320912 ~ 27324002 (+) True XLOC_006017
TCONS_00011868 lncRNA upstream 136736 27216641 ~ 27232573 (+) False XLOC_006014
TCONS_00011886 lncRNA downstream 401583 27785094 ~ 27805880 (+) False XLOC_006021
TCONS_00013614 lncRNA downstream 880725 28264236 ~ 28282182 (+) False XLOC_006024
TCONS_00013402 lncRNA downstream 894592 28278103 ~ 28282323 (+) True XLOC_006024
TCONS_00011892 lncRNA downstream 1023559 28407070 ~ 28414559 (+) False XLOC_006025
TCONS_00013403 lncRNA downstream 1092090 28475601 ~ 28483406 (+) True XLOC_006027
TCONS_00011879 mRNA upstream 36949 27328098 ~ 27332360 (+) False XLOC_006018
TCONS_00011880 mRNA upstream 36975 27329556 ~ 27332334 (+) True XLOC_006018
TCONS_00011877 mRNA upstream 43424 27316934 ~ 27325885 (+) False XLOC_006017
TCONS_00011875 mRNA upstream 44562 27314795 ~ 27324747 (+) False XLOC_006017
TCONS_00011876 mRNA upstream 51579 27316632 ~ 27317730 (+) False XLOC_006017
TCONS_00011884 mRNA downstream 385387 27768898 ~ 27782764 (+) False XLOC_006020
TCONS_00011885 mRNA downstream 386913 27770424 ~ 27782204 (+) True XLOC_006020
TCONS_00011889 mRNA downstream 568177 27951688 ~ 28009574 (+) True XLOC_006023
TCONS_00011894 mRNA downstream 1033786 28417297 ~ 28442086 (+) True XLOC_006026
TCONS_00011895 mRNA downstream 1111908 28495419 ~ 28501985 (+) False XLOC_006028
TCONS_00011873 other upstream 92082 27276570 ~ 27277227 (+) True XLOC_006015
TCONS_00011871 other upstream 131732 27232797 ~ 27237577 (+) False XLOC_006015
TCONS_00011865 other upstream 596943 26704273 ~ 26772366 (+) True XLOC_006010
TCONS_00011863 other upstream 659910 26703897 ~ 26709399 (+) False XLOC_006010
TCONS_00011851 other upstream 1924786 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011887 other downstream 411619 27795130 ~ 27795209 (+) True XLOC_006022
TCONS_00011888 other downstream 420556 27804067 ~ 27804145 (+) True XLOC_006021
TCONS_00011890 other downstream 1023402 28406913 ~ 28409584 (+) False XLOC_006025
TCONS_00011891 other downstream 1023552 28407063 ~ 28410545 (+) False XLOC_006025
TCONS_00011893 other downstream 1023867 28407378 ~ 28414559 (+) True XLOC_006025

Expression Profile

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