RNA id: XM_022665900.1


Basic Information

Item Value
RNA id XM_022665900.1
length 2713
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC111191304
representative True

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 83699 ~ 151251 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttgatagCAGATGGATGGCAAtctgctggttagattagtgggttctggggtttgataacaaaTGGAtgacgctgtgctggttagattagttgGTTCTGTGGTTTAATAAAAGACGGATGACGCTgtactggttagattagtagtctCTGGCGTTTGATAACACTGTACTAGATtagtagattagtaggttctggggtttgataggACACATGCTTTATTGCTATAGTTCACTTCAGTCTTTAGTTATTGACCTCAGAGCACCAGAATGAAGGTAGCAGCTTAATGCTAGCTAACAGCCAAACTTAGCAGAAGGCTCATAGAGTGTTATCACAAAGGCTAAAGGTTTTCAGAGATTAATTAATTGTTGTTTgagttcagaatgatgttactgTGCAGCTTTTAGATATTATATGTGTATGATGTCTTTATGTTATGAAGGTCATTACACAGAGCATGTAAtttgttagattttttaaattattgatATAAACACAAATGTAGTTTTATAGTTAAGACTGGTATACTTATCTTAAAATGCCCTTTTTGTATTATGTTTCTTAAATTTTTGCAGACTGGCTTACTGTGATCTTGGTGTTAAGACATGTGAAATACTAGGATCAGTTTTAAACTtggaaaactcctccctgaaagagctggaccttagtaacaatgacctgcaggattcaggagtggagctgctctctgttggactgaagagttcacactgtaaactggagacacTCAGATTATCTGGCTGCATGGTCACAGAAGAAGGCTGTGTTTCTCTGGCTGCTGCACTGAGTTCAAATCCCTTCCACCTGAAAGAACTGGATCTGACCTACAACCATCCAGGAGATTTAGGAGTAAAACTGCTCTCTGCTAGACTGCAGGATCCAAACtgcacactcaacacactcagagttgaACATGGAGGGAAACTTAGAATCAAACCAGGACTTAAGAAATGGTTCTGTGATTTCACACTGGATCCAAACACAGTAAACCCTCATCTCTCTTTGAGTGAGGACAACAGGAGGGCGATGAGGAGAGAGGAACTGCAGTCGtatcctgatcatccagagaTGTTTGATTATTGGCCACAAGTTCTGAGTAGAGAGAGTGTTACTGGGcgctgttactgggaggctgagtggagcggaagaggagctgctgtagctctgagttataaaaccatcagcaggAAAGGAGGAGAATCAGACTGTTGGTTTGGAGGGAAtataaactcctggagtctgaGCTGCTCTGATAACAGATACTCTGTTTATCACAATAAGAAAAGAACCGCTCTCCGCCCTCCTCCCTCCGGCTGTAGGAGaataggagtgtatgtggactgtcccgCCGGCATTCTGTCCTTCTACAGCGTCTCCTCTGATACACagtcacaaacaaacacacacttatatacacttaaCACCACATTCACTGAGCCCCTCTATGTAGGATTTGCTGTTTATGATGATTCCtcagtgtcagtgtgtgagaTAGATTAATCTTCCCTCTgtgagtatgagtgtgtgagtgtgggtgtGAGTGAGTGCGTATGAATGTGATTGTGTGAGTATGAGTGAGCAGGGCTCTAAACTAGCTTTTTGCACTGGTTGCACTGGTGTGCCTAATTTTGTTTCTTAGGTCAACCTGGAAAAGTTTTGGCAACCTTGCATTAAACATCACAGTTTTACAGGTTCACTTGAAATACAGGCAATTGAATAAAGGTACATGTGTAGACCTCATAGACCTACAAAAGTTTGTAGGTCTATGAAAAAGATATAAATTAAGTCTTAatcacaaacaaatataaaacacatcatACAAAaattttcactgtttttattaatacatTCTTAATTCCTGTAAGCTTTCATCGCCCTTATAAAACAGAGCATCATTTTGACTGACAGAATTGAGCTTTGAACTGTTGCATGTGTTCACAAGACAGTCCATCTTCATACGTCCTCTTTCACACGTTTATCCTTCTGAACCACTAAAGAACGCTAATCACCTGTATCAGGAGTAGTTTTGATAACAGtgtttaatgtaatatttcttttatgttttatagaaaataaattcacTGGAACtgcttatatatttttgccTATTTTAATAATTGCATATAAATAATTTCAGTTGTTAATTATGTTGTTATTCTAATTTTAATGAGACTGCTGGTGGTGATGATAATACAAATAGTCTAAATAATACACCATTAGCATGATTTTGGTCacaacttttatatttttttcaggtttcCTGGAAAGATCTTTGTTCACACTTCGTAGTTCAGATAAACTGTGGTACTAATGAAGTATGGCATTTTTGGTCGTGCTTCAGACGTTAGTTAGtaagctgtttacacactggATGCTGTAGGTGCAGCACTCACCGCTCACGCCTGCAGGACTGCGCTTACCAGCGGGACTGCTTGTGCAAATTTGCAGCGTTTattgttaaagcagcttcacactgcacaaataTAGGCACTGGTctggaacacagaaccttctagctgtatttactttcttgctccggcgccagacagctctgaccaatcagaggagaagatGTGCTCGTGTGGTTTGTTTGGTTGTAAAGGCTTGGTTTTCCCTTGAACGGCTGGTCGCACTGGGGCAACcttagattctttttttttagcctcACCATTAAGAAATTAAATTGGTCACactttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422678 lncRNA downstream 22350 117064 ~ 117820 (-) True G306934
TU422528 lncRNA downstream 58053 32740 ~ 82117 (-) True G306834
TU422689 lncRNA upstream 52802 204053 ~ 204448 (-) True G306943
TU422697 lncRNA upstream 76282 227533 ~ 232773 (-) True G306951
TU422718 lncRNA upstream 135647 286898 ~ 287535 (-) True G306968
TU422748 lncRNA upstream 271692 422943 ~ 424133 (-) True G306995
TU422757 lncRNA upstream 343287 494538 ~ 508941 (-) True G307001
XM_007235348.3 mRNA downstream 6577 108039 ~ 133593 (-) False tbc1d10b
XM_022665891.1 mRNA downstream 18742 104745 ~ 121428 (-) True tbc1d10b
XM_007235345.3 mRNA downstream 39141 92506 ~ 101029 (-) True LOC103044774
XM_007235349.3 mRNA downstream 63418 69819 ~ 76752 (-) True LOC103045793
XM_007235350.2 mRNA downstream 74607 57616 ~ 65563 (-) True cd2bp2
XM_022665898.1 mRNA upstream 1547 152798 ~ 163938 (-) True LOC103044465
XM_022665899.1 mRNA upstream 9141 160392 ~ 163938 (-) False LOC103044465
XM_007235343.2 mRNA upstream 125378 276629 ~ 319839 (-) True abcc1
XM_007235339.3 mRNA upstream 240947 392198 ~ 417382 (-) True nde1
XM_015601911.2 mRNA upstream 273075 424326 ~ 427020 (-) True pirt

Expression Profile