RNA id: XM_007233734.2


Basic Information

Item Value
RNA id XM_007233734.2
length 1416
RNA type mRNA
GC content 0.36
exon number 4
gene id smim22
representative False

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 771120 ~ 776215 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTGTGAGGGGAAAACAGCGCCCTCTATCGCCGCGTCCAGCAGGTTCGCTTCTGCGCCACAGGTGTGTGCAGCAGGTATCCCGGAAACCACAGCAAACGAAAGCAGaCGCAGCGATGGCTCAGAACAACGTTCAGCAGGAATTACAgaaccagtttactgatgttGTGAGCAGACTAAAGTCTAAGCAGCTCTTTCAGTCGGACTGGGACATCGCCTCCTTCGCCATCTTCTTCATTTTCATAGGGATGGTCCTCCTGCTGGTGGTCCTGGTCATCatacgctgctgctgctgttgctgctgtgaTGAGAAGCCCAAACATCACAAGGTGGGCATCGACAACATGGCAATGGAACCCTGAAGAACAGAAGAGCTCAACTCCTATCAATTTAAACACTGTACTTTAATCACAAATCTGTTTTCTCTGTTAAATTTGTGCCagattaataatgataaatgtTTTGAGTGAGTTTCTGTGTGAAGTGAACAGAGGAGAGGGTAAACAAATGAAAGAGATCTGAAAGTTAAATATTGTTACTGCAAACACCCACCATTTCCCAGATCCTCATATCATGTTCCATGAGTTTAATCAGCCAATGTTTTTGACACTGTGATGGGCAcatatttacaatttatttagttttctgaCTTTTATTACATGAAAATTGTCCTAAAATGTAAACTAATTGTAATGCTAATTATTTATAATCTACTAAATGTAACCCTCAGAGACACTTTTCATtgtgtaaatacagtacagtgagtttttaggaCCCTAATATATGACTGAAAGAGACTGCAATACAGGAATGacacagcataaaaaaaaaacaatgcgtCTGAGGGTAAAATGTAATCTTAAAATAGTAATGTTTAGATGctgttgatttattgatttttgtttgtttgtaaatcATCAAATGAAGATTAGCATAGCACATAGCACTTTACTCACAACCCTTGTAAGCACTATAAAATATTTCTTATATTCTTCACATTTTCTATTGCTTCATATGAATGATTGATATGAATGAAATATTTCACTGATGCAAAATGAATTTGTACAGTTCAGACAATTTATTGCACAGATACAGTCAACACACACTTCAGCTCTGATTTACACATTTGTTCAATATTGGAATTAACAGGAAAATGAACAAACAGAGGCTCACTGAGACCAACAGCAAGTGCATTCAGCATCACAATAAATAAAgcatacaaataaattaacaaacaatacCTGTCAGACAGTAATGTGTATTATAACATGTGTATCATActaaataatgatgataaataaactaatctaacattactttaataaattcCTTTTACGCTTCTGGAATGTAGTAAAATAGAAGGAGTCCCtaaattattttccttttttggagtgatgtagtaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422884 lncRNA downstream 16740 714416 ~ 754380 (-) False G307100
TU422885 lncRNA downstream 16740 736266 ~ 754380 (-) False G307100
TU422886 lncRNA downstream 16740 744704 ~ 754380 (-) True G307100
TU422878 lncRNA downstream 39249 687873 ~ 731871 (-) False G307097
TU422877 lncRNA downstream 39249 727623 ~ 731871 (-) True G307097
TU422922 lncRNA upstream 17284 793384 ~ 794830 (-) True G307130
TU422925 lncRNA upstream 107122 883222 ~ 894718 (-) True G307132
TU422945 lncRNA upstream 140996 917096 ~ 922717 (-) True G307144
TU422955 lncRNA upstream 194057 970157 ~ 986635 (-) True G307150
TU422956 lncRNA upstream 201800 977900 ~ 1044317 (-) False G307150
XM_022665875.1 mRNA downstream 100415 556386 ~ 670705 (-) False LOC103025515
XM_022665874.1 mRNA downstream 100418 556386 ~ 670702 (-) False LOC103025515
XM_022665876.1 mRNA downstream 134399 556386 ~ 636721 (-) True LOC103025515
XM_007235335.3 mRNA downstream 286218 452594 ~ 484902 (-) True pdxdc1
XM_007235337.3 mRNA downstream 286224 452594 ~ 484896 (-) False pdxdc1
XM_022665892.1 mRNA upstream 28549 804649 ~ 828631 (-) True rgs9
XM_007233736.3 mRNA upstream 124861 900961 ~ 911850 (-) True LOC103045885
XM_007233738.3 mRNA upstream 151952 928052 ~ 947398 (-) False wipi1
XM_015601427.2 mRNA upstream 151952 928052 ~ 947369 (-) True wipi1
XM_007233743.3 mRNA upstream 173569 949669 ~ 965473 (-) True LOC103021341

Expression Profile