RNA id: XM_007235335.3


Basic Information

Item Value
RNA id XM_007235335.3
length 4562
RNA type mRNA
GC content 0.48
exon number 24
gene id pdxdc1
representative True

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 452594 ~ 484902 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCCGTTGGCTACGTCAGCGCTGCCAGCACACCAGGAAGCGAGCTAAATCTGCACTAACAGCTGAAAGCAGAGGAGCGAAGAGGCGGAATAtcactcttatttattttaattccttTCTCCATATTTATTCTGGGCTTCCCTGAAAGAGCCGCGGATATTCTGACGCTCCTCTGGTCTCCACGCTCCGAGGAAGGACTGATTTTGAAAGATGGACCCAACGCTCGCTGAGATGGGGAGTCACCTCTCTGATGCCATGAAGATTTTGGAGAGTGGACAAATAGAGACAGCAGAAGACACAGGGAGACGGAGGCTGAGCTGGAGGGATATCCCCGGACCCCTGCAGGGAGATGGTCAGAATGTGGTAACTATTCTCCAGCTTGTTCAAAATCTCATGCATGACGACGAGGACAAACAGGCACACCGAATGCAGTATGTAGGAGAGCAAGGACACATGGCTTTATTGGGACACAGTCTGGCCGCCTACATTTCCGTCCTGGACAGAGACAGGCTCAGAAAACTGACCACTCGCATCCTCTCAGATACGACCCTCTGGCTCTGCAGACTCTTCAGGTATGAAAATGGTTCAGCGTACTATCATGAAGATGATCGTGAGGGCTTGGTAAAGGTGTGTAGGCTGGTTATTAACGCTCGATATGAGGACTACGCCACAGAGGGCTTCACAGTGCTCAGCGTTAAACAGCCTGTAATCTACCAGAGCGCTTCCTGCAGGCCTGGCCTGGGACAGCATCTGTGCAGCCAGCTCGGGTTGCCCTTGTCCAGTCTTTGTATCGTGCCCTGCAACACCATGTTTGGATCTCAGCACCAAATGGACATCGCCTTGCTGGACAAGCTGATCAGAGACGATGTGGAGACGGGGAAGCTCCCTTTGCTCTTAATAGCAAATGCTGgAACGCCAGGCGCAGGTCATACAGATAAACTGAGTCGCCTCAAAGAGCTGTGTGTGCAATATAATGTCTGGCTGCATGTTGAGGGTGTCAACTTGGCAACCCTGGTGCTTGGACAGATTTCCTCTGTGGTCACAGCAGCCACTAAGTGTGACAGTATGACGCTGACCCCGGGTCCTTGGCTCGGGTTGCCGGCTGTGCCAGCTGTCACGCTCTACAGACACGAGGATCCAGCGCTGtctctagCAGCAGGCCTAACATCCAGTCAGCCAGTGGAGAAGCTGCGTGCTCTGCCTCTCTGGCTGTCTCTGCAGTACCTGGGGCATGATGGGATTGTAGAGAGGATCAGGCATTCGGCCCACCTCAGTCAGACATTACTGGAGCAGCTAAAGTCACTGACCTCCATAAAGACTTCGGATGTCATCGACAGTGAAATCTCTCTCCTCGAGGCTTTGAGCATGGTGGAGGACGAGCTGAGTTCTCCTGTGGTCGTCTTCAGGTTCTCCCAAGACACCAGTTCAGCGTCAAGTGGCGGCTCTGTGGAGGGGTATTTTTCAGGAGATAGAGAGGTGCAGGATTCCCTTAACAGATGGCTTGGTGAGCAGTTGGCACTACTTGTTCCGACCAGTGGAGTGGATGTTGTGGAGTTGGAGGACgaaggagtgtgtgtgcgctTTAACCCTCTAATGACAGCCGCAGcTTTGGGGACTCAGGAGTCAGACGTGGCTCTGTTGGTGGAGAAGCTGGCTGAGATGGTTCCTGTGCTGAGCTGTACACTGCGTTTCAGGCTGGACTTCAGAGAGGAGGTTCTCCAGCATGCATGTCTAAGCTACATAGAGGACCTGAGTTGGCCTGGTCTCGGCGCTGTCAGGTATGAGTCTCGGAGGACGGACCTAGAGGAAGGAAagaggcagcaggagctggagaAGATCAATACAGAGCTGGTGAAGAAACTGAGGGAACTGGACACTGATCTGGAGTTCTCAACAgGTCCAGAGTTCAGTGAAGAGAGGAACTGTATATTTATCGGAATGGCAACTGAGGATCTGGATGTAGCGGCGTTGGTAGACACCATCGCATCTACTGGGAGAGAGGTTGAAGAGAGTGGAAAGCTGTTAGAGAACATGACCGAGGTGGTGAGGAAAGGCATCCTGGAGGCTGAACTGCAGCTGCAGAAAGCGTCAGAGGAGAAGCTCATGGAGGAGGGAGTCCTCAGGCAGATCCCACTGGTGAGCTCAGTGGTGAACTGGTTCTCCCCTGTTCAGAGTTCTGTTAAAGGCAGGACTTTCAACCTCGCtgcagGTTCACTGGACACTACTGATCCCATTTATGCTATGAAAGCCCAAACGAATAAAGAGGGTTCCTCTGAAACCCCAACAGCCACAGCCAAACGCCTGCCAGgtCAGAAGCTGTTCCGGCGCTCGGGGGCGGGTTCTGACTCTTTCAGTGAAACCAGCTCAGTCTGCCACCTGGAGGAGACCTTCAGAGAGCCGCTGCCGGCTGAAACGTCTGAACACACTGAGTCGGATCTGGAGGTACCTCACACGCCCCCCTTCCACGCTGAGGAGACCTCCGTCTCGGACCAGCGTGTCCCGGACGgccagggggcggagcctgaCTCCATCAGATAGAGCTCACTCCGCTGCAGGCgaagtgtgtgtactgtatgaaGCGCGGAGTGATCGCTCCCGGGTGCGCGACCTCGATGCCTTTGACAGAGTCACTCTAGAAATTAGGTTTATGAAGCAGCTTTAAGTGCAACTACTGCGACACTGGGGTTCCAACAGCATGCGTAGTTCCTCACAGCCCGGTTCTCACCACACAGATCTAGATACCTGCCGTCCTACCTGGCAAAAGGGACACTCCAGTATTCTCCAGCCTCATCTCTGTTTGCTGCATCTGCTGTGTATCATCCATTACCACAAACACTGATATCAGCTTAGATCCCAGAGAACTCAGAACTCCTTTATAATGTAAGTCGCTGCAGGTGATTAACCgtcattaaaataatagaatacacagaagaaccacttttgattCACTAAAGAATGTTTGGTTCCGATGATAGTGTGAAATCTGTTTTAAGAACCATTTTAATTTCATAAACATCTCTTttccaaaaaaacagaacaaacattataattattatttttggaagtaaaaatgttaaaaatgttatcaAATAGCACCTTTATCAATACTGAGATTTATATATTCTGTGAATTATAGTAGAGCCTTTATAGTGCTATATGAAATCGTTTTTAAAGAACCATCTACAAAAGGCTTTCCACCAATTAAAAGAACCCTTTATAACCAGGCAATAAACTATTGAAGCATCTGTGTGGTCCTAAACCACTAAAGAAAAGTATGGTGGAAAGCTTCTGATATGTGGTTCTTCATAGAGCCTTTTAAAGATCGTTCTGTGTAGCAATAATATGGGTTCTCTACTCTTGTCACGGCAAAGAACAGATCCTTTTTGCATAGAGAAAATGTGATGCGAATCCTGCATCATGCTGCTttacatcagcagccagagtctgagagagcacaattcaCCTTGCTCTCCCTGGGTGGGTATATGTTGGGGGGAGTGGGGGTGGTAGCGCTCTCCTTTTAGCTTTGCTGGCTACCcggtgatgctgcatcagtggGGTTTGGAAAAGAGgcgtggctgacttcacattcTTCACAATATTCTTTGCTTAAGAGTCTTTActctcctagtgttgggggcaTTGCTAGTTatagggagagtcctaatgagtgggttgtgttgtgttggtaagaaaatagtataaaatattaaatgtttattcacAGAACTCAGCAGCTGCCAATTGACTTCCATTATAAGTGAGTTTTGGATGATGAGGTTTTTGAACTCCACAGATGCAGCAAATGGAGACCAGGCTAAATAACAGTAGAATAGACCTTTAAAACCCTGGCTGTGTGTCACTGCAACACTCCTTCAGTCCGTCAGTGCACCGCCAGTTTGCTCCGTTCCTTTAATCGATTTACTTTATGCCATATTTTGATGTGTTCATACGTTAGAGATCTGATTGACCTCGTTattgtttcttcatagtttctAGTACActtcatttgcataaaataaGGGCTGTTTTGATGTTTACTTTGTGATTAAAGACTTTTATAATTTGTTCTGTTTAGTTGCCAAAACATGGTGGTGTAGATATGCGGTGAAGGAGGTCGAAGGCGATGCTTTGAGACTCATGCAGCTATTGATCTGATCAGAATGCCTTATTGCACTTTTTGTACAGAAAGTCATAATTTaatcagaaataaatgtttatttattctacAAAATTGTGATCTGAACAGACTAGACTGTAGGCTGTTAGTTAGACTctaatactgtatctgtaattcagaataataaaaaaaagagagaagggtaatctaatctaatctgtcCGTCCTGCACTTCTCTGTTCTGATGTTCTGAGCTGGCTGGGGTTGATACTCTGCTCTGGAGGGATTTGAGGgcttctgggttcttttgggaaaAGCAGCGGGTCTTAATGTTTACGAAGGATAACTGTAATGCCCCCCGGCTGCTTTGTGATTAATGTTGATTACTCTGTTGATTTTTGTTTCATCTCATTAAAACGTGTCACTGACAATTTTCCTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422748 lncRNA downstream 28461 422943 ~ 424133 (-) True G306995
TU422718 lncRNA downstream 165059 286898 ~ 287535 (-) True G306968
TU422697 lncRNA downstream 219821 227533 ~ 232773 (-) True G306951
TU422689 lncRNA downstream 248146 204053 ~ 204448 (-) True G306943
TU422678 lncRNA downstream 334774 117064 ~ 117820 (-) True G306934
TU422757 lncRNA upstream 9636 494538 ~ 508941 (-) True G307001
TU422762 lncRNA upstream 16981 501883 ~ 527475 (-) True G307005
TU422763 lncRNA upstream 21471 506373 ~ 508069 (-) True G307006
TU422803 lncRNA upstream 70475 555377 ~ 556258 (-) True G307041
TU422878 lncRNA upstream 202971 687873 ~ 731871 (-) False G307097
XM_007235332.3 mRNA downstream 3934 432157 ~ 448660 (-) True LOC103041204
XM_007235333.3 mRNA downstream 3934 432992 ~ 448660 (-) False LOC103041204
XM_015601911.2 mRNA downstream 25574 424326 ~ 427020 (-) True pirt
XM_007235339.3 mRNA downstream 35212 392198 ~ 417382 (-) True nde1
XM_007235343.2 mRNA downstream 132755 276629 ~ 319839 (-) True abcc1
XM_022665875.1 mRNA upstream 71484 556386 ~ 670705 (-) False LOC103025515
XM_022665874.1 mRNA upstream 71484 556386 ~ 670702 (-) False LOC103025515
XM_022665876.1 mRNA upstream 71484 556386 ~ 636721 (-) True LOC103025515
XM_007233734.2 mRNA upstream 286218 771120 ~ 776100 (-) False smim22
XM_022665892.1 mRNA upstream 319747 804649 ~ 828631 (-) True rgs9

Expression Profile