RNA id: XM_015601911.2


Basic Information

Item Value
RNA id XM_015601911.2
length 1512
RNA type mRNA
GC content 0.40
exon number 2
gene id pirt
representative True

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 424326 ~ 427020 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCACTGAGAGTTCACAATCCACTCAGGACCCTCGCCGGACCTCCTTTATGGACTATTGAGtTTCAGGATTGTCTGCACCATGTCACTAATGCTGAGCGATGAGCGGAAGGGCAGTGTGGAGGAGGCGTGTTTACCGCCCCGAGAGACTTCTTTTAAATCAGCGCTGAAAAGGCGCTGGAACTACTTTCACAAGCCTCTGCTGTCTATTTTAATCGGGGCACTGGTGTTCGGCACTGGCACTGCCATGTCCCTGCTGTACTTCACCCACGTGGGGAACGTGCCCTACCTGGTGGGACCCCTGTTCCTGTCTATGGGACTGATGTTTCTGGTCACTGGGCTGGTTTGGATCCCCATCATTAAGCAGAAGATGGTGCACACTGCCATGAGTCAGATGGGACACGACAGACCCCTGCTGCCACCGCGCGGGAGCTGTGCCACCATATCCTAAGAAGAGTCCCACTGCAGtcctgaaatctgattggctgagccagACCTAATGCTGATGTGACATAATAAGACACCAGGAGTCAGGCTTTACAGTTCCTCTATAATTCAGTGTGTGAGATGAACACATTCAGAGTCGTGGTTTGGTGTGAAACTGTGCTTCATTTTATGACCCTGGTTTctttacagtggtggtgaatagGTGCCTTAGGTGCctacaacacacaaaaaagccATTTCATTACTGTCCAATACCACCAATTAACCTACATGTATCTTCTGAGTGCCATGTGTTTTGTTGCTGgcaataaaatagcaaaaatgaaataaaatgtagatatgaaaatctgtttttctgtagggactattttttgctgcacaacGTCTGTGTATATTCCTCCACCAGTTTAATGATATGCAATTTTAAAAACACGTTTTTAGACACAAAATAATTTCCTGTATTTCTTTAAAACTGTTTGGACATCAGATATTAGtgcatttatattcatatttataattcattttTGTGACAAGCTTTTTTTAGAGGTTTCTCTTCAAACATGATTTCCACAGTTTCACACCAACCCCAGTCAAAATAATTAAAGTCATTTCTTAATGcagaaaactttaaattaattttgtcAGGCCCACGTGTGAATGTTTAGTATCAATGAATCTGGCAACCCTAGCTTACTTCACGGCTTGGTGAAGGGGTTGTTCATTTCAAGTACTATtatgtattcatttaaaatgtattatttaaaatatatatatttattgaacattgatatattttatcatgtttgtttttgttagttAGTAAAAGCCATGTGAGGTCATGTGATTTCACTCGGCTTCTGCTAACAGCCCCCGAAGGCCCCtgatttttcttacattttattttctttcatcccaaaaaataattatttttgctttttattcttGGTGATGTATGTAAACACAGTCATATGCAAAATGTTAGGTACCTCAGTCAATTTACAAGAGCACActtctgtacattttattatactgtttatttatcagttattattagaaaatacatagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422748 lncRNA downstream 193 422943 ~ 424133 (-) True G306995
TU422718 lncRNA downstream 136791 286898 ~ 287535 (-) True G306968
TU422697 lncRNA downstream 191553 227533 ~ 232773 (-) True G306951
TU422689 lncRNA downstream 219878 204053 ~ 204448 (-) True G306943
TU422671 lncRNA downstream 283187 83699 ~ 141139 (-) False LOC111191304
TU422757 lncRNA upstream 67518 494538 ~ 508941 (-) True G307001
TU422762 lncRNA upstream 74863 501883 ~ 527475 (-) True G307005
TU422763 lncRNA upstream 79353 506373 ~ 508069 (-) True G307006
TU422803 lncRNA upstream 128357 555377 ~ 556258 (-) True G307041
TU422878 lncRNA upstream 260853 687873 ~ 731871 (-) False G307097
XM_007235339.3 mRNA downstream 6944 392198 ~ 417382 (-) True nde1
XM_007235343.2 mRNA downstream 104487 276629 ~ 319839 (-) True abcc1
XM_022665898.1 mRNA downstream 260388 152798 ~ 163938 (-) True LOC103044465
XM_022665899.1 mRNA downstream 260388 160392 ~ 163938 (-) False LOC103044465
XM_022665900.1 mRNA downstream 273075 140170 ~ 151251 (-) True LOC111191304
XM_007235332.3 mRNA upstream 5137 432157 ~ 448660 (-) True LOC103041204
XM_007235333.3 mRNA upstream 5972 432992 ~ 448660 (-) False LOC103041204
XM_007235335.3 mRNA upstream 25574 452594 ~ 484902 (-) True pdxdc1
XM_007235337.3 mRNA upstream 25574 452594 ~ 484896 (-) False pdxdc1
XM_007235336.3 mRNA upstream 25574 452594 ~ 484896 (-) False pdxdc1

Expression Profile