RNA id: XM_022665896.1


Basic Information

Item Value
RNA id XM_022665896.1
length 4829
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC111191303
representative True

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 36305 ~ 53313 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTCGGCGCTCTGTACTCGACGGAGCGGGTTGAAATGGCGAAACTTGGGCGGCGTGGAAATGTCATACAAACATCCAGTCGGAGCCTTTGagaatataaacacagaaaccgGGCCTAGTGAAGCTGGATACTCTCTTTAGGCTGCGGGTTGAGGTGTACCGAGGGATACTGTGGGGTTCATGTTGACCTCTTCCCAGGAGCACATCCCTCTCAAAGTTACACCAATGGAGGAGGATGTGCTTTGTGCCGTCCGTCATGCTAAACCACAAATTGTCTGTCActcttctgttttgcacagCAGTGATGAAGTCAGAGGGTCGTCTCCACGCAGAAGAAGCGATCGGCTTCTCAGGAGCAAAGATCAGCCTGAGGAAAAAGCCCGGCCTGAGAACAGTGCTGGAGCACCAGCTCAGCGACTCAGCACATCCCTCGTCCAGAAAGAGAAATCCAGCAGGaaATGCTGTGAAAATACTGATGAAATTCAGTGGCCTGGAGATAAGACTTTAAGGAGCTGTAAGCGGAAGTTGGAGTTAACCATGCCGTCACACATCTCTTCGGCTTCAACCATTGTTGAGAAGCACAGCTGCAGTTCGGTGGAGTTTGAGTCAAAATGCACAGGAAGCCCTCCACCAGCAAAGAGATGGGTGATCGGTCCGCTTTTCCAGTCATTGAAGTCCAAGATGGCGAGCTTCACTGAGATCGTCATGAGTCCCGTTAGACTTTTCAAACCTAATGACTCTTCACTCTCAGATGCCTCCCCTAGCCATTGTGAACAGCTGACTGAtttcaataaagaaataaagaaagaatgtTCATCCAGAGCTAAGGAGGAACAAGTGAATGTTGAAAAAGATGACAAAGATGAGGTGTTCTCAAAAGAAGAGACAATATGTACTCCTCAGTCTACAGTTGTACAGAGACTTAGGTTCAACACACATTCAAGTAATGTAAGCGACTCTGTTCCGCAATCAGAAAATGAAAGCAGTGGTGTCTTATCTTTGCCACAGTCTGTTCCAGAAAATGATTCTTCAAACCCCAGAGATTTGTCCACACAGTTTGAAGAACCAATAGAGTCTTCAAGTGTCCAGGAACAGATATCGCAGGATAAAccagaatataaaaaagaagTCCATACAGCTACCTCAACATCTGAACAAACTGACATGTCTAATTTAGCTCAGGAAAAATTTGGATGTACTAATCCTAAACTGATCGTTGAATTAACAGACATGGCACATACTCTTGGTATAAGGTCACCAATTCATGAAGCTCCACATCAAAATACCTCATCTTTTTCATCCTCTTTGACTGAagatgtacaaaaaaaagaccTTTTCGACTGTAAGGAGCCAAGTTTGAAGATTCCCATCAGGACAAGCCCTAGAAAAACAATGAAACTTTCATCTAAAAATAAAGGAATGTCTGTAAAATCAGGTAAAAAAGGTTCTGCGACATTATCTGAGGCCTTGGACTACGTAAAACCTGGATTAAGGTCTGCGTCGAACAGTAAAGCACATGTTCAGCATTTGTCCAAGGATAAGGATGTTTTGACCCCTGTCTGTGAAACagagaagaaaaggaaagataCTCCAAATACATTCTCTGTCAGAGGTTTGGAGAAGGAAGAGTCTGTCAAGAAGGTGACGAATAGTTCCAAAAGGACAAGGAAGGAATGCAAATTTGACCATATGGATGAATCACCTACGGTCACACTAACAAGAATCGATGGGAATGTGACATCAGTTGGTAAACGGAAGAAGGTCCAAGTTACAGACAGCGCAGCACTTCGTATTTGTAACGCCAGCGTTGTTGTAGAAATGATTGAATCTGTTCCAGAGAGTTCAGGTAATGAAGCATCTgtggaaaaacagaaaataggCCAAAATAGAGCATCTAGGAGTAAAAGTAGGAGAGATGCACAATGTAGAACACCGGCAGTCTTAGGAAGCAAGAACAATGTCAGCGACCACTCGTCTTCCTCAGACGCAATGAAAAGTGCCTTGATGGATAACAGTTGGCAGGGTAAAAAAACAGACCTGAGTGACTATGGGGCTGACATCCCAGTAGAAGCTCGTCAATCAATAAGATCCGTGAGCCCGCAGAAGATGGCTAAAGATGAGCCTTCAGTGATGTCTACTAGATCTCGAAAGATGAGACAGTGCAAAGTgatgctgtgtaaaataaggaaaaCTGAGGACTTGGAAACAGGTGTAGAAACCCACTCTTTAGCTGGAAAGACTAAAGAACCTTTAGCCAAAAATAGGCACCAAGATTGTGAAGAAATGATCAATGCCTCTGATCATGAACATTCAAAAATTACACTTAGGAACCACAGTCGTCAAGCTAAGCATAAACTTGAGACTTCCAGTGCAGCTTCAGTGGTTTCTTCAAATTGGCCTGCGATTAAAAAGCCAACTGTCAGTGCCAACAAATCAGAAAACAGAGCAGCTAAAAGAGCTACTGATGAACTTGAAGAACAGAGGGTATCGATGTCATTGACTTTGCAGGTTGACACTGAAGCACCTGTGCACTCTGATTCTACAGCTCCATGGCAGACAGCAAGACAAGTCCACTGCAGAACAACAAGAAGATTGGGGAAAGTGGGCACTCCTGCTGTGGAGAGAAATGGCACCTCCTCTACATCCAAGTCAACATCTATGTACTTAAATGATCAGGATTTACTTGACCAGGGTGATGGACATTTGAGTAAGACAGAGTTGTTTGcaagaaaagagaggaaactGAAAGTAGACAAGCAGAGAAGAAGGTGTACGTCCTTGGCAAAGAAGATTGATGTTCAAGACGATGGCGTGCAGACTGGAAACCTCAAGGAAGTGGCTGTCCCTGTTGTGTCGTTGTCAGGTAGCGGCTCCAGTCGCCTCCTGCGAAGCTTTTCCTGTCCCGACATCCCGTCCTTCCTGCACAGTGACTATGCCTCATTGCCACCCCTGCATGACCCAGTTCCTCCTTCTCCACCCAAAAAGTCCTGCCCTGCACCACCACATACTCCGCATCCTCACTCTCCGTCCAAACGTGCCCGCAGGCACACCGTGTGTAGCGTGGAGATAGAGCGGGAGATCGCCCCCTTGTGCCTTCGAAAGGAAGTGTGCCCGTATTCACACTCCAGCTCCCTCACAGCCCTCGCGTCCACCTTTTTGTCCAGTCCCCTAGCCTTCCTGTCCAAGAAATCAAGCCAAGGATGTAGTGGTGATTACCTTGGCCTTGCCCGCACTTCTCCACGTAGATTCAAGTCCTCATCACCCTCTTTCCTGAAATCCCCCACTTCCCCAACCCTCACCGCCAATCCTGCTTTCTCCGCCAGTGTCCCTCACACACCTGAGCAATCCTCTGCTTCTGTATCATTTCCATGCAGTGTATTGGAGCCTGTTCCCATGGAGGCTGATGTGGTCCAGCAAGTATGTGAGGAATGTGAGGAAGATGAGCAATCCAACTTCAGCCTTGAGCTTTCATCCAGAGTCGATTCTGAGGAGAAAGCTTTATCGGATTCTGAGATCAAGACTGATGACAAGCAAATGGAGCGAAGAAAAGTGTCCTCTATCCGAATCCGGAAAACTCTTCCCAAACCCCAGTACAACCTCACACCAATGGGCCTCCCAAAGGCCATCAGGATAAAGAAAAAGGTTTTTAGTGTGGAAGAAATCTACACAAACAAGAACTTCAGCAAACCTCCTGAAGGACGTTTGGAGACCATATTTGAGATGCCCCTTAGCCGGCGGGATGGGTCAGAGTCGCTGATTGGTCTGAAACGGATGAAGCGCTTTGTTGAATTCCCTGAACTGGGTGTGGCCAGGAAACCCAAAAAGCCTCTGGTTGGTGCAGCAGGGGTAGGTGCAGCTCAAAGGAAAGCAGCGGGGAATTGTGGAGTGGGCAGAACACGCCGGGGTGTTGGTGCATCCTTCAAGGAGGAAGAGACGCTCACTCCGCAGGACCTTGATTCACTGCTGTGCTCGAAACTGAACGAGCTGGACCTCTGGATGGCGATAGAGCAGGTGGCATACTGAAGCCTTTTTTGTGTACtattggttttgttttgtttttttttgtgttgttttctcCTTATTGTACAACCACTCCCTCATGTTCAGCACGTCCAAGTAATATTAAAACCCTCCACAAATGTACAgttgtgtactgtatgtatacatgtactgttttttttttttttgtatattctgTATAGTCTGTAATAGTTAGCATTATTTGTGTAAAAAGTATCTTGTGATTGTTTTGTTGCTGTTTGTGATTTATATTATTGCTGTCATATGAAAACTTTAATTCCATTTAAAACAGCAGCttccattctttacattgtgaaCATTTCTTCAGCATGAACtgataaaattaactaaaattatttaaacttcTTTTACATTAACATGCATTAAGTTAAGAACATTTTGGAGATGCAAGGTTTTTCATATGACAGAGTTTCAGTGATGGCTTATTTGAAGAGATATAAAGTgatatatactgatatatatGTACTAATATGCAGATATTTGGGCACCCAACATAAATGGTTTATTTGCGCAATTTAAcatgtataaaaacataaaatgtggcatgtgaaaaaaataatggcaGATTTTACAtccttttttacacattttcaaaTTTTGCttagttaatttatatattCTTAGAACACATACTTTAAGCAGGGCTGTCCAAACATTACATAATTGCTGTCATATTAAAGTCTAGTGTCTCCTTCCCCcaaagaaaactgtattaaatgatccaaagttaaaaaagtttctttaaataaaatcctatttaatgtattaacttaagtttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422671 lncRNA upstream 30386 83699 ~ 141139 (-) False LOC111191304
TU422678 lncRNA upstream 63751 117064 ~ 117820 (-) True G306934
TU422689 lncRNA upstream 150740 204053 ~ 204448 (-) True G306943
TU422697 lncRNA upstream 174220 227533 ~ 232773 (-) True G306951
TU422718 lncRNA upstream 233585 286898 ~ 287535 (-) True G306968
XM_022665888.1 mRNA downstream 12878 8769 ~ 23427 (-) False cunh16orf58
XM_007235350.2 mRNA upstream 4303 57616 ~ 65563 (-) True cd2bp2
XM_007235349.3 mRNA upstream 16506 69819 ~ 76752 (-) True LOC103045793
XM_007235345.3 mRNA upstream 39193 92506 ~ 101029 (-) True LOC103044774
XM_022665891.1 mRNA upstream 51432 104745 ~ 121428 (-) True tbc1d10b
XM_007235348.3 mRNA upstream 54726 108039 ~ 133593 (-) False tbc1d10b

Expression Profile