RNA id: XM_015603181.2


Basic Information

Item Value
RNA id XM_015603181.2
length 1569
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103046328
representative True

Chromosome Information

Item Value
chromosome id NW_019172862.1
NCBI id APWO02000125.1
chromosome length 627872
location 134421 ~ 148800 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgcacagtgtaagggacagcaaaaatgaagatacaacGAGGATATTCACAATGTTAACTAGAGTAATTAAAGTGTTATTGCACTTTTAACACATGCATCAGCATCGCTTGGTCTTTTTCcagcatacaataaaataaatacatcatattacaatacaatactgaTATTTTACTCCAATAACTTCAATAACATCAATCTTAGCTTTTTTAGCTTCATTTTAATCTAAACTACAAAATGTACTGCATCGTACTGTCTCAGCAATCATCATTACtttaacactaaacactaaaacatGGTGCAGGtagtataagtatatataatgGTGGGAGCAGATGCTGAACCAACAGAGCAGAtgtttaataaacagagtctatatatattaatagttaatagtgTTTTATAATTGGACTAATGTAAGTTATAATTCAGTGTATATGGAAGGGGTTATCACCACACAGCCCTGGACTCTGCAGGCTCTTTTAGCCAATCCTAGAGCACCATGTGGGTGGGAGGAGCTTGTCAGAATACAGGTGGGAAAAGGCAGCAGTGACAGTGACAGGTGGGGATGAGCCGGCGTCTGCAGGTCCTGCCGCATGAGGGCTAATGGGAAATGGGCTCAGGCTCCCCTGCACCCAGACAACCTGCAGCCCAATGTCCCGCTGCTGCCAGTCTtCCAATGGCCAGCAACCAGGAGCGCACCTTCATCGCCATCAAACCGGATGGAGTTCAGAGAGGACTTATCGGAGAAATCATTAAACGATTTGAACTGAAAGGATTTAAGCTGGTGGGCCTGAAGATACTGCATgccAGTGAGGATCTTCTGAAGCAGCACTACAGTGATCTGAAGGACAGGCCATTCTTCCCCGGCCTCGTCAGTTATATGTCCTCTGGCCCTGTTGTTGCCATGGTGTGGGAGGGGTGTAATGTGATAAAAACAGGCCGTGTGATGCTCGGAGAGACTAACCCTGCTGATTCTAAACCTGGAACTATTCGAGGAGATTACTGCATCCAGGTTGGCAGgaACATCATCCACGGCAGCGACTCTTTAGACAGTGCCAGCACTGAGATCAGCCTGTGGTTCACCCCCGAGGAGCTCTGTAACTACAGCAAGTGTCACGACACCTGGATTTAGAtcttttctctccatctctaccaGCTTTTCCAGTTCCAATCTGATTGCGGACTgtatgttttctctgttttcttgagtcagttttcataaaaaatcatttttcatgtaatttttaagactttttataGAAGATTCGACTGAAAGAAGGTACTGGAAGACCATTAGCACTgtagagcatttaaaaaaatgtacattatatATGTAACTGAGAGGTTGTCCATTATCCAAGTTTAcatctgcaaataaaaaatgtattacagaacagaaaaaaacagctttttttattattatgatcattattattattattattaactttttaaGCTCTATCATACACTCTCTGCACATGGTGTGTCGTGATGCTCATCgccatcttacaccccaccaacagtgtattttcactccttcctcctgtctggtttaaacagcagcaga

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429281 lncRNA downstream 26599 106736 ~ 107822 (-) True G311930
TU429272 lncRNA downstream 80073 52589 ~ 54348 (-) True G311924
TU429164 lncRNA downstream 117020 16102 ~ 17401 (-) False G311835
TU429304 lncRNA upstream 30691 179491 ~ 185152 (-) True G311947
TU429305 lncRNA upstream 30691 179491 ~ 185152 (-) False G311947
TU429312 lncRNA upstream 94843 243643 ~ 317971 (-) True G311953
TU429347 lncRNA upstream 456242 605042 ~ 605292 (-) True G311988
XM_022666292.1 mRNA downstream 114616 18066 ~ 19805 (-) True LOC111191400
XR_001518328.2 other upstream 475634 624434 ~ 624795 (-) True LOC107197026

Expression Profile