RNA id: TU463378


Basic Information

Item Value
RNA id TU463378
length 1094
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G336765
representative False

Chromosome Information

Item Value
chromosome id NW_019172929.1
NCBI id APWO02000036.1
chromosome length 2533676
location 1138922 ~ 1141652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttgtaaaatttaatGCACATTTTTGATCTTTAAAAATCACACTTTAAATTCTGACGCACAtcatttgtctgtttaaatccGACTTTAAATTTTgctatgcattttttttgttggtataaatttgactttaaattttaattaacatttttttgtctgtaaaaatctgattttaaattttgacacatttttcagGTCTGTAAAAATCTAACTCAGTGTAAAAAGGcctaaatacattaatatcattaatcattaatatgaTTTTTGAGTGAATTTTTTGACGTGCATTTCTTTGGCAACTATAACATTTCTGACTTAGTGTAAAAAGGCCTAAATACATCGTCACCAACACTTAATATGATTTTTGGGTGGTTTTAACAACGAAAAAATTAAACAcgattcgggccagccctaattcTGTTGTGTGCTAACACaaagcatatgtgtgtgtgtgtaagtgtgtgtgcgagtgagtgatTGAGTGCATTTAAATATTTCCCTTATAGAGTAATGTAACATCACACTCTGCAGGGTCGCTACCCTtagctaaaaataaagaataatgaaGCCTTTCATACGATAGCATAAGTGagggaagagtgtgtgtgagtgtgtgagggagtaaAGGGTGATGCACAgggttttgtgcgagtgtgtcgTGGGTTTTATTTGTTCTGAAAGTGAGGAAAAGCAGGTTTTAGAGGAGGAAGAGCAGCTGGAGTGTTTTTGTGTGAAGAAACACATGAGGCGATTTTTAATATGGAGCTCTGTAGATCTCTGAGGTCGTCCGTCCTTCTGTAGACGTCCATCAAGTTCACGTTCGGTGCTGTGGGTCCATTAGGAgggtaaattaaattaacagtGATCACAACCTGCGGTAAACATTTATtctattatacagctctgaaaaatgatgaattttttccttaattttatcaaattgaaatcctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463346 lncRNA upstream 59377 1080504 ~ 1081141 (+) False G336751
TU463364 lncRNA downstream 108 1141760 ~ 1143163 (+) True G336758
TU463242 lncRNA downstream 13786 1155438 ~ 1156491 (+) True G336685
TU463392 lncRNA downstream 54615 1196267 ~ 1198637 (+) True G336773
TU463400 lncRNA downstream 68041 1209693 ~ 1217233 (+) True G336780
TU463409 lncRNA downstream 96144 1237796 ~ 1246807 (+) True G336784
XM_022668333.1 mRNA upstream 168356 865810 ~ 972162 (+) False LOC103021459
XM_022668315.1 mRNA downstream 146381 1288033 ~ 1308759 (+) True atp1b3
XM_022668316.1 mRNA downstream 229183 1370835 ~ 1376535 (+) False LOC111191989
XM_022668318.1 mRNA downstream 281058 1422710 ~ 1494453 (+) True atr
XM_007238771.3 mRNA downstream 355653 1497305 ~ 1513877 (+) True amer3
XM_022668305.1 mRNA downstream 379510 1521162 ~ 1636487 (+) True LOC103023036
TU463362 other upstream 14171 1123361 ~ 1126347 (+) True G336757
TU463336 other upstream 49786 1084170 ~ 1090732 (+) True G336750
TU463332 other upstream 74444 1059645 ~ 1066074 (+) True G336746
TU463328 other upstream 90911 1045544 ~ 1049607 (+) True G336743
TU463305 other upstream 158138 980060 ~ 982380 (+) True G336726
TU463393 other downstream 33855 1175507 ~ 1198637 (+) False G336773
TU463418 other downstream 146570 1288222 ~ 1300229 (+) False atp1b3
TU463420 other downstream 146570 1288222 ~ 1300824 (+) False atp1b3
TU463421 other downstream 146570 1288222 ~ 1300731 (+) False atp1b3
TU463428 other downstream 163652 1305304 ~ 1308952 (+) False atp1b3

Expression Profile