RNA id: TCONS_00002868


Basic Information

Item Value
RNA id TCONS_00002868
length 1567
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_000581
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46217503 ~ 46219161 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGactATTATACTGTGCAAACCCCTAAGCCCCCCCACAGGagattttcaaaataattattttgtgatttatgagccatttttcTCATGGGGATCCAAAAAATGTCCTCAAACGGTAAAATGTACTTGCTATAGGCAATACAACACATGTACAGTACCGTACACACACAGTCTTAGTCTCTCCATTCCTCACCTGTCTgcatctctctctcactctctctctctcttcttggCTTCCATCAGTCTGTTTTCTGTGGTTTGGCACTTCTCCACAGAAGAGGATTTAGGAAGTTTGGCTGGCTGTGAGACCAATGCACATGCCTGTTTTACAGCGAAAGCAGAATTGTCTTTGTGTGAGATACAGTCACCTCCATCTCCTCCACACACAATCCCTGACCTCTCTGTCACCCACATGATTCACCTGCATGCTGCTGATGGGAAGGGGCTTGCGTAGCATCAGGACTTCTTATTGCTTAACCACAGGGTTAAAGATTTTACCCACTTCACCATAACTCATCCTCTACCGTTTGTGGTATAAACGTGAATGAGATCTCACAATGTGCAGTTGGTTGAGAAGAGGTGCGCAATTATTAAGTAGACAATTTTCAACTGAGAATGCTTAAAAAGGAGCGGAAAAATCTATAGATGCAGTATGAAGGCAACTAGGACTAAAGTGTCATGTAAGGCCTCCTGCTTTAACAGCCAAAGAGCATCACCAAGGTCACGCGCTCATGCGGTTCTCATCCAGCGCACAAATGGATTGCATGCAATGTAAGTGACATGGGTTAAAAACATCTGCCAAACGCATTAATGGAGAAACGTTCAGTCCTCTCCAATGAAGGTCAATATTTTCGAGAATGCCATTAAATGTGCTTTATTAACTTTTGGCcctctactttaaaaaaaaaaaaaaaaaaaacagttaaatatattgtacaaaacccaacattcatttaattttcttatggcttagtcccttatttatcaggggtcgctttattggaatgaaccaccaactattccggccgTTTTGCGCAGTGCATTccttttcagccacaacccagcactgggaaacatccatacacactcgttcacacacatattcatacacTGCGggcaattttagtttatttaattcacctatagtgtatgtctttggactgtgtgggaaactggagcacctgaaacccatgcaaatatatggggagaacatgcaaactccacacagaaatgccaactgacccagccttggtctcataccagcgaccttcttgctgtaaggcaactgtgctaaccactgcaccatgGTGCCACATAAAACCCAGTGTGGTCCAGAAAATAATTTAGCCTTTTTTATTGACTTAACTTTTCTTATTAACTGATACATTGCTAATGTGCAAAACAGTAGAAGTATGCTATTATATGCTGTATTTATATAGTGATGTGAAAAAGTGTTGGCCCACCATTGCCccctatttctttctttctttctttctttctttctttctttctttttttgttttggcatgtttatcacactttaatgtttcagatatttaaaaaaaaaa

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0003012 muscle system process biological_process
GO:0003015 heart process biological_process
GO:0032502 developmental process biological_process
GO:0044057 regulation of system process biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0048770 pigment granule cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0042470 melanosome cellular_component
GO:0005593 FACIT collagen trimer cellular_component
GO:0005594 collagen type IX trimer cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001009 lncRNA upstream 64303 46039237 ~ 46153200 (+) False XLOC_000579
TCONS_00001010 lncRNA upstream 64303 46053427 ~ 46153200 (+) True XLOC_000579
TCONS_00003129 lncRNA upstream 64660 46032751 ~ 46152843 (+) False XLOC_000579
TCONS_00003127 lncRNA upstream 156010 46032720 ~ 46061493 (+) False XLOC_000579
TCONS_00003130 lncRNA upstream 163904 46038894 ~ 46053599 (+) False XLOC_000579
TCONS_00002869 lncRNA downstream 28457 46247618 ~ 46248591 (+) True XLOC_000582
TCONS_00001012 lncRNA downstream 30818 46249979 ~ 46251824 (+) True XLOC_000583
TCONS_00003131 lncRNA downstream 44290 46263451 ~ 46272326 (+) True XLOC_000584
TCONS_00002870 lncRNA downstream 87854 46307015 ~ 46307550 (+) True XLOC_000585
TCONS_00003133 lncRNA downstream 499935 46719096 ~ 46726957 (+) False XLOC_000591
TCONS_00001011 mRNA upstream 21396 46194333 ~ 46196107 (+) True XLOC_000580
TCONS_00001008 mRNA upstream 186926 46026457 ~ 46030577 (+) True XLOC_000578
TCONS_00001006 mRNA upstream 196778 45958904 ~ 46020725 (+) False XLOC_000577
TCONS_00001007 mRNA upstream 196793 45969240 ~ 46020710 (+) True XLOC_000577
TCONS_00001004 mRNA upstream 257782 45925150 ~ 45959721 (+) False XLOC_000577
TCONS_00001014 mRNA downstream 185807 46404968 ~ 46452686 (+) False XLOC_000587
TCONS_00001015 mRNA downstream 186133 46405294 ~ 46450270 (+) True XLOC_000587
TCONS_00001016 mRNA downstream 274783 46493944 ~ 46594288 (+) False XLOC_000588
TCONS_00001017 mRNA downstream 290015 46509176 ~ 46593899 (+) False XLOC_000588
TCONS_00001018 mRNA downstream 360724 46579885 ~ 46590637 (+) False XLOC_000588
TCONS_00000997 other upstream 448973 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00000982 other upstream 1046851 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 1207887 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00000971 other upstream 1219733 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000970 other upstream 1227957 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00001013 other downstream 181451 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00001019 other downstream 363306 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001025 other downstream 870340 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001027 other downstream 876664 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001046 other downstream 1678108 47897269 ~ 47897385 (+) True XLOC_000608

Expression Profile

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