RNA id: TU65627


Basic Information

Item Value
RNA id TU65627
length 560
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G48555
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 84774 ~ 150432 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacatacttgctctcactctctctctctttcacacacccACGACAGGTAGAGTTAAAGATTCCTGTTTGcacacagccaaaaaaaaaaaaaaaagaggaaaaattataaagaataaaatagagaaaagaaaaagaaaactgtgagtgccacatctatatatatatatatatttatacgaTTTTCAGGAAAAGTCCAGAGTTAATTTTGTACAAATTCAGAGACGATAGTTGTGTTATCTGGGTGTATCAGAGTGTTTGTAGTTTTGGTCgtgtcttttgtctttttcaggGCTTTTTGAATTGTTGTATTTGTTTAGACAGATGGAGATCTATGAGATCTATGGCGAATCGTCTGGTTTCCGGGGGCTCTCGTGTTTCCAGGGGGTTCTCGTGGTTGTTGATGTGGTTCGTTGGCGTGGGTACCCGCTCCTCTTCAGCAGGTACAGTGATTGTATCGTAGTTTAATTTCTGAGGGTCAGTTAAGAGGTTTCCGCTCTCGTTGGTGTTGTtggtgtgtacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65617 lncRNA upstream 5453 63922 ~ 79321 (+) True G48551
TU65632 lncRNA downstream 502 150934 ~ 151459 (+) True G48558
TU65665 lncRNA downstream 59622 210054 ~ 210287 (+) True G48579
TU65666 lncRNA downstream 61967 212399 ~ 212710 (+) True G48580
TU65669 lncRNA downstream 66415 216847 ~ 217501 (+) True G48583
TU65689 lncRNA downstream 120603 271035 ~ 271342 (+) True G48589
XM_022670970.1 mRNA downstream 113298 263730 ~ 269522 (+) True LOC111192744
XM_022670982.1 mRNA downstream 203604 354036 ~ 477296 (+) True ajap1
XM_022670987.1 mRNA downstream 1264842 1415274 ~ 1461698 (+) True LOC103041629
XM_015603140.2 mRNA downstream 1610380 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 1622487 1772919 ~ 1786362 (+) True LOC103027674
TU65829 other downstream 657723 808155 ~ 811265 (+) True G48714
TU66507 other downstream 2832414 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 2832492 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 2832492 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 4094096 4244528 ~ 4246227 (+) True G49475

Expression Profile