RNA id: TU65632


Basic Information

Item Value
RNA id TU65632
length 526
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G48558
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 150934 ~ 151459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatgaaactgaaacacctgtcgtcattttagtgtgggattttaggtttcatggctaaattggagcagcctggtgttcaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattacaatgcacacaacattatgggggacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacaacaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaagaaccacccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaaacataaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaatcaattattgtgctctaaaaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65627 lncRNA upstream 502 84774 ~ 150432 (+) False G48555
TU65629 lncRNA upstream 31044 84774 ~ 119890 (+) True G48555
TU65600 lncRNA upstream 54795 72389 ~ 96139 (+) True G48541
TU65617 lncRNA upstream 71613 63922 ~ 79321 (+) True G48551
TU65665 lncRNA downstream 58595 210054 ~ 210287 (+) True G48579
TU65666 lncRNA downstream 60940 212399 ~ 212710 (+) True G48580
TU65669 lncRNA downstream 65388 216847 ~ 217501 (+) True G48583
TU65689 lncRNA downstream 119576 271035 ~ 271342 (+) True G48589
TU65700 lncRNA downstream 205874 357333 ~ 357775 (+) True G48596
XM_022670944.1 mRNA upstream 19296 122069 ~ 131638 (+) True LOC111192720
XM_022670970.1 mRNA downstream 112271 263730 ~ 269522 (+) True LOC111192744
XM_022670982.1 mRNA downstream 202577 354036 ~ 477296 (+) True ajap1
XM_022670987.1 mRNA downstream 1263815 1415274 ~ 1461698 (+) True LOC103041629
XM_015603140.2 mRNA downstream 1609353 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 1621460 1772919 ~ 1786362 (+) True LOC103027674
TU65829 other downstream 656696 808155 ~ 811265 (+) True G48714
TU66507 other downstream 2831387 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 2831465 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 2831465 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 4093069 4244528 ~ 4246227 (+) True G49475

Expression Profile