RNA id: TU65700


Basic Information

Item Value
RNA id TU65700
length 214
lncRNA type intronic
GC content 0.40
exon number 2
gene id G48596
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 357333 ~ 357775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAGGCTGTATGGagatgatggtggtgtgatTATAAGGCTGTATGGAGATTATGGTGTGATTTTAAGGCTGTATGGagatgatggtggtgtgatTATAAGGCTGCATGGagatGATGGTGTGATTATAAGGCCATATGGAGATGATCGTGTGATTATAAGGCTGTATGGAGATGATGGTTTGATTATAAAGCTGTATGGAGATGGTGTGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65689 lncRNA upstream 85991 271035 ~ 271342 (+) True G48589
TU65669 lncRNA upstream 139832 216847 ~ 217501 (+) True G48583
TU65666 lncRNA upstream 144623 212399 ~ 212710 (+) True G48580
TU65665 lncRNA upstream 147046 210054 ~ 210287 (+) True G48579
TU65632 lncRNA upstream 205874 150934 ~ 151459 (+) True G48558
TU65714 lncRNA downstream 79823 437598 ~ 488309 (+) False G48608
TU65718 lncRNA downstream 92271 450046 ~ 471659 (+) True G48610
TU65713 lncRNA downstream 123809 481584 ~ 488309 (+) True G48608
TU65715 lncRNA downstream 123809 481584 ~ 584273 (+) False G48608
TU65697 lncRNA downstream 198015 555790 ~ 559237 (+) True G48594
XM_022670970.1 mRNA upstream 87811 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 225695 122069 ~ 131638 (+) True LOC111192720
XM_022670987.1 mRNA downstream 1057499 1415274 ~ 1461698 (+) True LOC103041629
XM_015603140.2 mRNA downstream 1403037 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 1415144 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 1641799 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 2002147 2359922 ~ 2362224 (+) True LOC103028158
TU65829 other downstream 450380 808155 ~ 811265 (+) True G48714
TU66507 other downstream 2625071 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 2625149 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 2625149 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 3886753 4244528 ~ 4246227 (+) True G49475

Expression Profile