RNA id: TU65784


Basic Information

Item Value
RNA id TU65784
length 400
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G48673
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 589133 ~ 589532 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCCGCGCCGGGCCGGGGAGAGATCACGCCGAGCCTGGGAGCGGTGGTATCGGGATGGGGAGCGATCACGTCGGGCTGGGGAACGGCCTTGCCGAACCTGGGAGCCGGTAACCGCCGAAATAGCAGGGGCATCGGGCACGGAGACGACGGATCGCAGCCTTGAAGTGGGGCGGGATGAAGCAATGGACGAGGAGCCGGAAAACAACTCCGAGTCCGAGGCAACTAGATCCAGATCCATGGTGAGTGAGTGACGGTGAACTTCGAAAACAGGTAACTTGGCAGTCACGCGAGGTTGAACGTCACAAAGGTGAGGGGAAACAGGGAGGTATATATATGGCCAAGGGGAGGAGCTTGTAATTGAGGCGCGCTCCATATACCAAAACTCTGTTAATACTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65782 lncRNA upstream 288 588554 ~ 588845 (+) True G48671
TU65715 lncRNA upstream 4860 481584 ~ 584273 (+) False G48608
TU65697 lncRNA upstream 29896 555790 ~ 559237 (+) True G48594
TU65698 lncRNA upstream 29896 555790 ~ 559237 (+) False G48594
TU65714 lncRNA upstream 100824 437598 ~ 488309 (+) False G48608
TU65789 lncRNA downstream 47123 636655 ~ 636858 (+) True G48678
TU65792 lncRNA downstream 73793 663325 ~ 663663 (+) True G48681
TU65794 lncRNA downstream 118226 707758 ~ 707984 (+) True G48683
TU65795 lncRNA downstream 122321 711853 ~ 713531 (+) True G48684
TU65801 lncRNA downstream 147499 737031 ~ 743091 (+) True G48689
XM_022670982.1 mRNA upstream 111837 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 319611 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 457495 122069 ~ 131638 (+) True LOC111192720
XM_022670987.1 mRNA downstream 825742 1415274 ~ 1461698 (+) True LOC103041629
XM_015603140.2 mRNA downstream 1171280 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 1183387 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 1410042 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 1770390 2359922 ~ 2362224 (+) True LOC103028158
TU65829 other downstream 218623 808155 ~ 811265 (+) True G48714
TU66507 other downstream 2393314 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 2393392 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 2393392 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 3654996 4244528 ~ 4246227 (+) True G49475

Expression Profile