RNA id: TU65795


Basic Information

Item Value
RNA id TU65795
length 875
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G48684
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 711853 ~ 713531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCAATTGATTAGTTAAAAATTGGCAAATAACCTAACAAAGGAAAGGGTATATATAGACAGGAAAACAGGtgaaaataatcattagtttcaatatttaaaaaaggaaagaggcTTTTATTACAAGACTTATTGCAAAATGCTAAATAGATACATACCAAAAGATACAAGACCAGATAACTGAGCAAACAAAGGCTATAaagagtagaaaaaaaacatacaaaacaaacaagaatcaCATAAAATGTAGTAATGCATTGGTGAGTAGTCAAAACTTGGCAAATAACTCAACAAAAGAAAAGGGTATATACAGGCAAGATAACAGGGGAAAACAACCAGTAGTCAGGTGACTGAGACCAAGTGAGTGTCAAACGTCAATTTAAGTATTACTTGATTGCTCCCAATCAAGTGAAACATAATATTGAGTCTATTATATAAAGTACCGATTTCTGGGATATGAGTAGAATTCCATTTCTGGTCAGTAGAGACAGGTGAGGGTATCCTGTAGAATTTCCCTCTTTATAGTGAGACTGGAGCTTGATTTTCTCCtctactgtatctctctctctctttctctctgaaagATGAAAGCGTTAAGTGCTGTCTGTCTGACGGGGGCAGTTTGGGTTCTTCACCAGGTCTCCCACTTTATCCATATCATCTAAAATCCCCTGAACTCCTCCGACTCTCCTCAGAAAACCTCCAGCCGGAGAATCAGACGGACCCCCGGTGTTAATGTGGGCACATTCGCAGTAATGAATGTACTTCTCACCCAGTTGCTTGGCAACACAGTAATATACTCCATCCTTTACCTGACGCGCCGCATGCCAGCAGGAGTGGACGCGCCGGGCCGAGCCCGGCACTCATCAGGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65794 lncRNA upstream 3869 707758 ~ 707984 (+) True G48683
TU65792 lncRNA upstream 48190 663325 ~ 663663 (+) True G48681
TU65789 lncRNA upstream 74995 636655 ~ 636858 (+) True G48678
TU65784 lncRNA upstream 122321 589133 ~ 589532 (+) True G48673
TU65782 lncRNA upstream 123008 588554 ~ 588845 (+) True G48671
TU65801 lncRNA downstream 23500 737031 ~ 743091 (+) True G48689
TU65804 lncRNA downstream 33445 746976 ~ 747178 (+) True G48692
TU65846 lncRNA downstream 110916 824447 ~ 824677 (+) True G48730
TU65871 lncRNA downstream 211211 924742 ~ 925198 (+) True G48754
TU65879 lncRNA downstream 259762 973293 ~ 1070880 (+) True G48760
XM_022670982.1 mRNA upstream 234557 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 442331 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 580215 122069 ~ 131638 (+) True LOC111192720
XM_022670987.1 mRNA downstream 701743 1415274 ~ 1461698 (+) True LOC103041629
XM_015603140.2 mRNA downstream 1047281 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 1059388 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 1286043 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 1646391 2359922 ~ 2362224 (+) True LOC103028158
TU65829 other downstream 94624 808155 ~ 811265 (+) True G48714
TU66507 other downstream 2269315 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 2269393 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 2269393 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 3530997 4244528 ~ 4246227 (+) True G49475

Expression Profile