RNA id: TU65804


Basic Information

Item Value
RNA id TU65804
length 203
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G48692
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 746976 ~ 747178 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcaagaggaagatggatgatcacaagccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagatatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgtataaaaaaactgtgattaaaaaccagaccaggattattccaccaaatattgattatttctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65801 lncRNA upstream 3885 737031 ~ 743091 (+) True G48689
TU65795 lncRNA upstream 33445 711853 ~ 713531 (+) True G48684
TU65794 lncRNA upstream 38992 707758 ~ 707984 (+) True G48683
TU65792 lncRNA upstream 83313 663325 ~ 663663 (+) True G48681
TU65789 lncRNA upstream 110118 636655 ~ 636858 (+) True G48678
TU65846 lncRNA downstream 77269 824447 ~ 824677 (+) True G48730
TU65871 lncRNA downstream 177564 924742 ~ 925198 (+) True G48754
TU65879 lncRNA downstream 226115 973293 ~ 1070880 (+) True G48760
TU65900 lncRNA downstream 299636 1046814 ~ 1470024 (+) False G48771
TU65922 lncRNA downstream 444260 1191438 ~ 1242534 (+) True G48781
XM_022670982.1 mRNA upstream 269680 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 477454 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 615338 122069 ~ 131638 (+) True LOC111192720
XM_022670987.1 mRNA downstream 668096 1415274 ~ 1461698 (+) True LOC103041629
XM_015603140.2 mRNA downstream 1013634 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 1025741 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 1252396 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 1612744 2359922 ~ 2362224 (+) True LOC103028158
TU65829 other downstream 60977 808155 ~ 811265 (+) True G48714
TU66507 other downstream 2235668 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 2235746 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 2235746 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 3497350 4244528 ~ 4246227 (+) True G49475

Expression Profile