RNA id: TU65829


Basic Information

Item Value
RNA id TU65829
length 801
RNA type TUCP
GC content 0.56
exon number 2
gene id G48714
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 808155 ~ 811265 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTTCGGTTTCGAGCGAcacgggggacagacacagtctcaatcctaCAAGGTAAAAATGCACTTGTATCTGAAAAAGGCACATAATTAAAACTCACAGCCTTATGCACAGGAAAGTGGCAAGATAAATCATTAGAACAATTTATATTACTAAACTGCCCATTACTTAGACCACTAACCTGGCCGGTATGACTGGTTAGAGCCAGTCAGTCCCGGCGTAGCACCGCCTCAATGTTACCAGAGAGGACGGTGGATCCCAGGCGGCTGGGGTGAAGCCCGTCTCGGTGGAAGAGGGTGGACGTTCCGAAAACTCTTCCAGTTGTCCACGTAGCCAACTCCACTAGCAGAGCACCAGTCCCGCAGCCAGCAGTGGAGAGCGTAGAGGCGGCTGAACGGCTGGCTCCCGCGGCGGTAGGTGGGCATCGGACCAGAGATGAGGAGGCGGGCGCGGGTCAGTCTGCGAGCGGTATCCAGAAGAGTGCGAAAGTGCTCCTTCAGGACCTCACTGCGCCGGGCGGACGTGTCGTTGGTACCCACATGCAGGATGACGGTGCCGGGGTCCCCGCGATGCCGAAGCACCGTAGGAAGCCGCCGGGCGAAGTCCAGGACCCGAGCTCCTGGAAAACACGACACTGCAGCATTACTCTTAGCGTTAGACACCTTTAAATGCCTAACAATGGAATCTCCGACAATGAGGGTACTGCCCTTATCTGTTTTCCTCGGGGCTGGGGGAGGTGAAGGAGGCGACGGCGACGAGCTGAGGACCTCAAACCGGTTTGCGGATGCAAAATCCGGCTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65804 lncRNA upstream 60977 746976 ~ 747178 (+) True G48692
TU65801 lncRNA upstream 65064 737031 ~ 743091 (+) True G48689
TU65795 lncRNA upstream 94624 711853 ~ 713531 (+) True G48684
TU65794 lncRNA upstream 100171 707758 ~ 707984 (+) True G48683
TU65792 lncRNA upstream 144492 663325 ~ 663663 (+) True G48681
TU65846 lncRNA downstream 13182 824447 ~ 824677 (+) True G48730
TU65871 lncRNA downstream 113477 924742 ~ 925198 (+) True G48754
TU65879 lncRNA downstream 162028 973293 ~ 1070880 (+) True G48760
TU65900 lncRNA downstream 235549 1046814 ~ 1470024 (+) False G48771
TU65922 lncRNA downstream 380173 1191438 ~ 1242534 (+) True G48781
XM_022670982.1 mRNA upstream 330859 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 538633 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 676517 122069 ~ 131638 (+) True LOC111192720
XM_022670987.1 mRNA downstream 604009 1415274 ~ 1461698 (+) True LOC103041629
XM_015603140.2 mRNA downstream 949547 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 961654 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 1188309 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 1548657 2359922 ~ 2362224 (+) True LOC103028158
TU66507 other downstream 2171581 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 2171659 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 2171659 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 3433263 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 4807894 5619159 ~ 5627452 (+) True prok1

Expression Profile