RNA id: TU65900


Basic Information

Item Value
RNA id TU65900
length 2772
lncRNA type sense_over
GC content 0.36
exon number 3
gene id G48771
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1046814 ~ 1471342 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagtgctgagcaaaaagcacaaaattactgtatctcagaaagctgcaggagagcagagGGGGGCTATTAaacaaagataagaactttatatcatgttttactacaacaaaagtcaatttaacACCAGAGTTCAGACCTTTAAGAAACAATGAgggtcagtcaatctaaaaaaagaagaatttcaagaacttcaaaagaccatcaaaaacgtatGTAAAAATACTGATgattaaactggcactcatcagaactgcaagttaacagctccccagataagagctagTTAAtccttcttcacagagtattttggtttgtttaacactgtttttaagttactgcatgattccttatgtgttccttcataatctgatagatcacttcactattcatttactatgtagggaaataaagataaatattaaaacattgaataagtaggtgtgtccaaaccgcAACACTATAAACACTCTTCCCTttaagctacacacacacacacacacacaccaataaaccaatgCAATAACCGTCCCTGTGGGCGTCCGTATGAAGACAAAAGCTCGGCTGAGAAACTACAGAAGAGGATGATGTCATAAACAAAACTCACTGTAATTGTGATCCCAAATCAGATGACTACTCCAAACCATGCACAATGAACTGTtacaagtgcacacacacacttacacacacaaacacgcgcTTGGTACGCCATACGAAcggtacacagacacatcccCACTctgttatatatacacacacacacattcacacacacatttcacactCATTTACAGCAGAATCCATGTAAATTTCTCTCATGTGTTTTATATGAGTGTTAGTGCTTCGTGCTGTTAGTAGATTAGACTTTGCTATCCTCAATATTCTCTCAATGTGACCCAGAACCACTATAAAAGGCCGCCGCACACCGGAAACGCAACACTGTGAAGAGGCTGGCAGCcctcaaaacattaaaataaaaagaaataaaaaaagattcaatTCCTGAGCACCAAGCAATATTTTCCATTGTAACATTAAAGgaataatcagtaataaatgtgagcaaatgtgtgaaatggctacaggaaTCCATTGATTTCTAAACACTGAGTTCTCTGCACAAGTCTCATTAGTGAATATATATTAGTGCATCTGAaagaattagaatatcattgaaaagttgctttatttcagtgattgagctgaaaatgtaaaattcatattatataatatagatgtattacagacAGAGTGATCTTTTATTGTTgaggatttaaaaaaagatcagtatctcagaaaatttgaatattatgtaagaccaattggtactttcggcagtgtgtgggcagtgtgccaagtcctgctggaaaatgaaatccgcaaaTCAAGTCAAAATTTagggcagttttgttttcccacaaaatcttacagcacttcatgcttttctctgctgatgacaacttttatagagatgcagatttcattttccagcaggacttggcacactgcccacactgctaaaaaagtaccaatcggtcttaatattataatattctaatttcctgagacttttttattgactgtaagcTGTAATTGAACAATtacaatgaacaataaaaaagtaaatgcttaaaatagtacattttgaactgaattactgaaataaagtaactttacaataatatactatatatatttttttcaggtgCACTAGTATGTTCTATTGTACAAAATCTTTTCGCTAGTGGTGGTGCTAAATTActcagctatggttagcaaaccttactgaagctcagtgattacctgttcagcagaaacgTTCTATACCTGCCAACCCAGGGTGTGGAAATTGTAAGACTGTAGGAAATGAAAGGTGGTGGGCAGGTTTAAAAGCTAAAACCTACATAGATTACCGTGACATGTCGCACAGTTGACAGTTcaagtaagaaaatactggctgaagctctgctgacacaCTTCCTTAAATGGTCCTTTAAATTAAAGAGAAAGCCATACCACAAAAAAGACCCATGATAATTTATGCTTTTGACTTCCAAAGAGTCtagatttgcattttttttccaaacgcTGTATCCGATTGCCTTACCTGAACATCTTCAACATAAAGAGGTCCTCGTTTTAAAGCTTGCCGCCCTCATTTTAGTTGTTTTCGTTGCTCGGTGTGCGACGGCCTTAAGAGAAACCACTCCATCTCTTCCACCCACTGCTGCTCTCCACCACGATCTGATCAGACGTTCATAACTGCCCACAGGAGTGTCCAATCTGCAGGAAATATAaggaataaacaaaacagtgaagGACTGTTGTCAAAAATCATCAGCAGAAACTGAAAATATCCAGCTTGCCTGTGACATACTGCACAGttctaataagaaaatactggctgaagctctgctgacaatgGAATGGAATAAGGCTGGTTGGATTTCCACAGATTTCCACAGAATATAAtgaatattatgaccacttcCTTCTTAGTTTTTACACTTACTGTTCATTTTTCAGCTCTATTGATCCTATAGTTTAATCTGTAGTtctattataattacagactgtagtcacaatgctagtgatagagGAATAGAGTTACCTATACAAAAAATGACTATTTTACATTAGTAACTCAAAAATatctccacacttcattggtagaattctgagggtcctgacatttaaaacgaggcacttgtaaggaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65871 lncRNA upstream 121616 924742 ~ 925198 (+) True G48754
TU65846 lncRNA upstream 222137 824447 ~ 824677 (+) True G48730
TU65804 lncRNA upstream 299636 746976 ~ 747178 (+) True G48692
TU65801 lncRNA upstream 303723 737031 ~ 743091 (+) True G48689
TU65795 lncRNA upstream 333283 711853 ~ 713531 (+) True G48684
TU65906 lncRNA downstream 21297 1491321 ~ 1506286 (+) True G48772
TU65962 lncRNA downstream 136451 1606475 ~ 1610296 (+) False G48815
TU65964 lncRNA downstream 136451 1606475 ~ 1611232 (+) True G48815
TU65971 lncRNA downstream 169955 1639979 ~ 1727282 (+) True G48822
TU66023 lncRNA downstream 333733 1803757 ~ 1904244 (+) True G48857
XM_022670982.1 mRNA upstream 569518 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 777292 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 915176 122069 ~ 131638 (+) True LOC111192720
XM_015603140.2 mRNA downstream 290788 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 302895 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 529550 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 889898 2359922 ~ 2362224 (+) True LOC103028158
XM_007231678.3 mRNA downstream 995569 2465593 ~ 2474573 (+) True adipor1
TU65829 other upstream 235549 808155 ~ 811265 (+) True G48714
TU66507 other downstream 1512822 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 1512900 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 1512900 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 2774504 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 4149135 5619159 ~ 5627452 (+) True prok1

Expression Profile