RNA id: TU65964


Basic Information

Item Value
RNA id TU65964
length 961
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G48815
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1606475 ~ 1611232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attagtgtgattgcagtaatgcaatcacagtattgatcttcttaagtcttattagtgtgattgcagtaatgcaatcacagtattgttcttcttaagtcttattcttcttcttcttattattattccacctgttttttgtcCGGTTAACTAGTGCCGCAGTTTTCGAAATATCGACTTCgttcaaaagagaaaacgtGCGTCCATATCGGGAATGGtgggcttgtatacagctttccgatcggacttacgtttttcgtaaaaacttcgtaagtACGCGTTTTTTgaccattgaaaatgaatgggcagAACTTTGCACGCCCGTGGACGTCGCAATTTTTGAAATACGAAGATGAAACCAATTGAGGacctgtagaacttattgagctCTTTCCGAAAATATGCGTTACGAAAAGTTACGACGTACGGATTTCGTACGATTGTCGTACGAAGTGGCCCCATTGGAATGAATGGGGCCATCGGAGGACGGCAGCTAGATCGAAGGACAGGTAGCTAGaactccagtactgtgagtgtatggagcagctatgggataaaacagcattaggtcaaaagtttggacaccccggccccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65906 lncRNA upstream 100189 1491321 ~ 1506286 (+) True G48772
TU65890 lncRNA upstream 135133 1463023 ~ 1471342 (+) True G48771
TU65894 lncRNA upstream 136310 1463023 ~ 1470165 (+) False G48771
TU65950 lncRNA upstream 186273 1419732 ~ 1420202 (+) True G48805
TU65947 lncRNA upstream 210852 1392909 ~ 1395623 (+) True G48803
TU65971 lncRNA downstream 28747 1639979 ~ 1727282 (+) True G48822
TU66023 lncRNA downstream 192525 1803757 ~ 1904244 (+) True G48857
TU66036 lncRNA downstream 224086 1835318 ~ 1851766 (+) True G48868
TU66057 lncRNA downstream 278675 1889907 ~ 1934861 (+) True G48887
TU66065 lncRNA downstream 282686 1893918 ~ 1895755 (+) True G48891
XM_022670987.1 mRNA upstream 144777 1415274 ~ 1461698 (+) True LOC103041629
XM_022670982.1 mRNA upstream 1129179 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 1336953 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 1474837 122069 ~ 131638 (+) True LOC111192720
XM_015603140.2 mRNA downstream 149580 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 161687 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 388342 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 748690 2359922 ~ 2362224 (+) True LOC103028158
XM_007231678.3 mRNA downstream 854361 2465593 ~ 2474573 (+) True adipor1
TU65829 other upstream 795210 808155 ~ 811265 (+) True G48714
TU66507 other downstream 1371614 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 1371692 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 1371692 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 2633296 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 4007927 5619159 ~ 5627452 (+) True prok1

Expression Profile