RNA id: TU66058


Basic Information

Item Value
RNA id TU66058
length 370
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G48887
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1889907 ~ 1934861 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttctatgattttaccaaattaaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgtatgaaaaaaactgtgattgaaaaccaccaggattattccaccaaatattgatttctgaactcttaaaacttgagccatttctcattttctgtaaataaatgctctaaatgagaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66023 lncRNA upstream 30177 1803757 ~ 1904244 (+) True G48857
TU66065 lncRNA upstream 38666 1893918 ~ 1895755 (+) True G48891
TU66036 lncRNA upstream 82655 1835318 ~ 1851766 (+) True G48868
TU65971 lncRNA upstream 207139 1639979 ~ 1727282 (+) True G48822
TU65964 lncRNA upstream 323189 1606475 ~ 1611232 (+) True G48815
TU66120 lncRNA downstream 61550 1996411 ~ 1997862 (+) True G48936
TU66122 lncRNA downstream 67507 2002368 ~ 2003124 (+) True G48937
TU66146 lncRNA downstream 118772 2053633 ~ 2053849 (+) True G48958
TU66147 lncRNA downstream 119029 2053890 ~ 2054152 (+) True G48959
TU66183 lncRNA downstream 263731 2198592 ~ 2198936 (+) True G48991
XM_022670945.1 mRNA upstream 148059 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 170346 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 472723 1415274 ~ 1461698 (+) True LOC103041629
XM_022670982.1 mRNA upstream 1457125 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 1664899 263730 ~ 269522 (+) True LOC111192744
XM_007231153.2 mRNA downstream 64713 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 425061 2359922 ~ 2362224 (+) True LOC103028158
XM_007231678.3 mRNA downstream 530732 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 543730 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 575283 2510144 ~ 2521419 (+) True LOC103031418
TU65829 other upstream 1123156 808155 ~ 811265 (+) True G48714
TU66507 other downstream 1047985 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 1048063 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 1048063 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 2309667 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3684298 5619159 ~ 5627452 (+) True prok1

Expression Profile