RNA id: TU66065


Basic Information

Item Value
RNA id TU66065
length 230
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G48891
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1893918 ~ 1895755 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggttgctaaggtgttgctaagtggttgctaggcagttgctatcatttctaaagtggttgctaggcagttgctaacgttttccaggtggttgcttaagtggttgctaactggttgctaggcagttgctttcatttctaaagtggttgctaagtggttgctaggcagttgctatcgtttctaaagtggttgctaggcagttgctaacgttttccaggtggttgctaggcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66036 lncRNA upstream 42152 1835318 ~ 1851766 (+) True G48868
TU65971 lncRNA upstream 166636 1639979 ~ 1727282 (+) True G48822
TU65964 lncRNA upstream 282686 1606475 ~ 1611232 (+) True G48815
TU65962 lncRNA upstream 283622 1606475 ~ 1610296 (+) False G48815
TU65906 lncRNA upstream 387632 1491321 ~ 1506286 (+) True G48772
TU66081 lncRNA downstream 20840 1916595 ~ 1952370 (+) True G48897
TU66058 lncRNA downstream 38666 1934421 ~ 1934861 (+) False G48887
TU66120 lncRNA downstream 100656 1996411 ~ 1997862 (+) True G48936
TU66122 lncRNA downstream 106613 2002368 ~ 2003124 (+) True G48937
TU66146 lncRNA downstream 157878 2053633 ~ 2053849 (+) True G48958
XM_022670945.1 mRNA upstream 107556 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 129843 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 432220 1415274 ~ 1461698 (+) True LOC103041629
XM_022670982.1 mRNA upstream 1416622 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 1624396 263730 ~ 269522 (+) True LOC111192744
XM_007231153.2 mRNA downstream 103819 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 464167 2359922 ~ 2362224 (+) True LOC103028158
XM_007231678.3 mRNA downstream 569838 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 582836 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 614389 2510144 ~ 2521419 (+) True LOC103031418
TU65829 other upstream 1082653 808155 ~ 811265 (+) True G48714
TU66507 other downstream 1087091 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 1087169 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 1087169 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 2348773 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3723404 5619159 ~ 5627452 (+) True prok1

Expression Profile