RNA id: TU66371



Basic Information


Item Value
RNA id TU66371
length 638
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G49096
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2295667 ~ 2296359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


gccacggGTCACACGCCATAATCTTATTTATGTTATTGTACAATCTGAATTTAtaacaaacaataataaaaaagattagTAAGATGTACAGTATTCCAATGATCTGAGCTAAGACAAATCACGCAAACAACCACACGTCAACTCCGGTGTTCTACTCAAgttcaaaaaatgagaaaaacaggTAGAGGTCATGGTGTGGCTTAAGCTGAGGCATGAGTTCTTTccagatggtgtgtgtgtgcgcgagtgtgtgtgtaagagattgagagagaaaagaagagagtaGGTATGTGCACTGGTGGATTCAAGGACGACGGAGATGACGAGAAGGTGAGCAGAGGGAGAAATGAAAGGATGCATACAAatgagaagacaaaaaaaacagagctaaaGACGGACAGACGGaggatgtggtgtgtgtgtgtgtgtgtgtctgcagtaAAGTCTCAGTTGGTGTATATTTGTCCCTCAGGCGGTTGTGGTAGTTTCATGTTCTCTTTGCACATCATGAGTCGTCTGAGCTCCTGCAGCACCACCCGAATACTGTAGGAGTTCTGCCACTTCGCCAAGGAGGACACTGCCCTCGTATCCACCTGTACAGACAGATaaaaagatagacagacagacagacagacaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66183 lncRNA upstream 96731 2198592 ~ 2198936 (+) True G48991
TU66147 lncRNA upstream 241515 2053890 ~ 2054152 (+) True G48959
TU66146 lncRNA upstream 241818 2053633 ~ 2053849 (+) True G48958
TU66122 lncRNA upstream 292543 2002368 ~ 2003124 (+) True G48937
TU66120 lncRNA upstream 297805 1996411 ~ 1997862 (+) True G48936
TU66388 lncRNA downstream 19032 2315391 ~ 2317685 (+) True G49109
TU66393 lncRNA downstream 43846 2340205 ~ 2342509 (+) True G49112
TU66397 lncRNA downstream 88067 2384426 ~ 2384635 (+) True G49114
TU66402 lncRNA downstream 94003 2390362 ~ 2390581 (+) True G49118
TU66403 lncRNA downstream 102123 2398482 ~ 2398829 (+) True G49119
XM_007231153.2 mRNA upstream 294497 1999574 ~ 2001170 (+) True LOC103045867
XM_022670945.1 mRNA upstream 509305 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 531592 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 833969 1415274 ~ 1461698 (+) True LOC103041629
XM_022670982.1 mRNA upstream 1818371 354036 ~ 477296 (+) True ajap1
XM_007231679.3 mRNA downstream 63563 2359922 ~ 2362224 (+) True LOC103028158
XM_007231678.3 mRNA downstream 169234 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 182232 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 213785 2510144 ~ 2521419 (+) True LOC103031418
XM_015600866.2 mRNA downstream 213785 2510144 ~ 2521419 (+) False LOC103031418
TU65829 other upstream 1484402 808155 ~ 811265 (+) True G48714
TU66507 other downstream 686487 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 686565 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 686565 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1948169 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3322800 5619159 ~ 5627452 (+) True prok1

Expression Profile