RNA id: TU66397



Basic Information


Item Value
RNA id TU66397
length 210
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G49114
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2384426 ~ 2384635 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aaccaggattattccaccaaatattgatttctgaactctcaaaactttatgaatatgaacttgttttctttgctctgcatcttttgtgttatttcagccatttctcattttctgtaaataaacgctctaaatgagaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66393 lncRNA upstream 41917 2340205 ~ 2342509 (+) True G49112
TU66388 lncRNA upstream 66741 2315391 ~ 2317685 (+) True G49109
TU66381 lncRNA upstream 69278 2268337 ~ 2315148 (+) True G49102
TU66371 lncRNA upstream 88067 2295667 ~ 2296359 (+) True G49096
TU66183 lncRNA upstream 185490 2198592 ~ 2198936 (+) True G48991
TU66402 lncRNA downstream 5727 2390362 ~ 2390581 (+) True G49118
TU66403 lncRNA downstream 13847 2398482 ~ 2398829 (+) True G49119
TU66404 lncRNA downstream 18048 2402683 ~ 2402977 (+) True G49120
TU66405 lncRNA downstream 19880 2404515 ~ 2404728 (+) True G49121
TU66406 lncRNA downstream 40495 2425130 ~ 2426168 (+) False G49122
XM_007231679.3 mRNA upstream 22202 2359922 ~ 2362224 (+) True LOC103028158
XM_007231153.2 mRNA upstream 383256 1999574 ~ 2001170 (+) True LOC103045867
XM_022670945.1 mRNA upstream 598064 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 620351 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 922728 1415274 ~ 1461698 (+) True LOC103041629
XM_007231678.3 mRNA downstream 80958 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 93956 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 125509 2510144 ~ 2521419 (+) True LOC103031418
XM_015600866.2 mRNA downstream 125509 2510144 ~ 2521419 (+) False LOC103031418
XM_015600864.2 mRNA downstream 142834 2527469 ~ 2583319 (+) False LOC103026437
TU65829 other upstream 1573161 808155 ~ 811265 (+) True G48714
TU66507 other downstream 598211 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 598289 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 598289 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1859893 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3234524 5619159 ~ 5627452 (+) True prok1

Expression Profile