RNA id: TU66400


Basic Information

Item Value
RNA id TU66400
length 1166
lncRNA type read_through
GC content 0.46
exon number 2
gene id G49116
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2432799 ~ 2479371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacactcatatcatatacacacacacatacagtacacacacaagCGTTCCCTTGCTTATTGCAGCAATAATAAAAGGGTTTATTTGGATTAAGTAAAACCTGGATGCCAGAGTTGGTGACACCTGAAATGTGAGGCCCTGAGCTTTTATTAAACAGACAGAAGAATCTGTACGGCCGCTTTTCCACCGCAGGGCAGAACGGTAACGATGGCCACGGCGTACCTGTTAGCGCTGCTTcggtttcttcttcttccattTGCTGTGTTGTTAAATCAAGTGCACAGCATCTCTTTATGGTAATAATGTGACAGTTGCCGTTGTTggatggatgtgtttttttgtttttttttttagctatggCAGACATTACTGCCATGATTTCCCAGAGCTAGCATGTTAGCATGCTATCCTGCAAAACGGAACATATAAACTAGACGCGAAAGAGAGAACTGTGATCTTTTCACAAGAGCTACAGGCCTATTGGCTTTGTCCAACATCACCACAGCAGCGGAAGCATGCTGGCTTCTGGTGTTATCCAGCATTGCTACCGCAGCGTTAGCATGCTGGAAACTGGACTCATCCTACCTTGATCTAGCTGCATTAGCACACTGGCTactggcctcatccaacatccaaCATACCTTTACTGAGGCGTTATGACGCCATATACCGCAAacttaaggccaatttataatTTTGCGTCAAGCCAATGTCGTAGCCGGTGGGCACCTCCCCAGAAATGTGACGTGAACagctgcagctgtgattggctacGTCGTAGCTTGACAAATAACTACAAATATGGGCAGCTGCATGGGGCGCTCGCACAGGCTGTGCCATAGACAGCCCATTGACtcgacacagaagtataaattagCCTTTAGCAAGGCtcagacagccaatcagctgaTGCCATCATTTGGTTAGTTAACTGTGCTGAGAAAACCAGTCTCCGCCCAGTTTGTAAGCGCGTCGTGCCGAAAAGTGtccaaaaatgtgaaaaattccATGCTCACAACTGTTCGGCACTGCAGTGGAAAAGCGGCTGTGTGTACgtatgtgtacgtgtgtgtgtgtgtgtgagagagagagagaatgtgtatgtgtgtttggtggGGGCACAACAGCAGTTTGGCTGAGAAAGTcgaaaaaaaAAAGTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66401 lncRNA upstream 3156 2428120 ~ 2429643 (+) True G49117
TU66409 lncRNA upstream 4888 2426273 ~ 2427911 (+) True G49122
TU66406 lncRNA upstream 6631 2425130 ~ 2426168 (+) False G49122
TU66405 lncRNA upstream 28071 2404515 ~ 2404728 (+) True G49121
TU66404 lncRNA upstream 29822 2402683 ~ 2402977 (+) True G49120
TU66451 lncRNA downstream 177825 2657196 ~ 3150588 (+) True G49146
TU66455 lncRNA downstream 191446 2670817 ~ 2672813 (+) True G49150
TU66456 lncRNA downstream 201827 2681198 ~ 2681503 (+) True G49151
TU66460 lncRNA downstream 227652 2707023 ~ 2708224 (+) True G49154
TU66461 lncRNA downstream 227652 2707023 ~ 2709154 (+) False G49154
XM_007231679.3 mRNA upstream 70575 2359922 ~ 2362224 (+) True LOC103028158
XM_007231153.2 mRNA upstream 431629 1999574 ~ 2001170 (+) True LOC103045867
XM_022670945.1 mRNA upstream 646437 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 668724 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 971101 1415274 ~ 1461698 (+) True LOC103041629
XM_015600865.2 mRNA downstream 30773 2510144 ~ 2521419 (+) True LOC103031418
XM_015600866.2 mRNA downstream 30773 2510144 ~ 2521419 (+) False LOC103031418
XM_015600864.2 mRNA downstream 48098 2527469 ~ 2583319 (+) False LOC103026437
XM_007231675.3 mRNA downstream 48099 2527470 ~ 2583319 (+) True LOC103026437
XM_007231674.3 mRNA downstream 48099 2527470 ~ 2583319 (+) False LOC103026437
TU65829 other upstream 1621534 808155 ~ 811265 (+) True G48714
TU66507 other downstream 503475 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 503553 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 503553 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1765157 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3139788 5619159 ~ 5627452 (+) True prok1

Expression Profile