RNA id: TU66401


Basic Information

Item Value
RNA id TU66401
length 1524
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G49117
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2428120 ~ 2429643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttaaaTGGTCAGAAAATTGAActgaaaaaacactcaaaattaCACTTTTCACATTACACAGGTGAGTATGCAgcagtaagatttttttttctgagtacACAATAATACCAGTTCATCACATAATCAAACCAATATGAACCAGAAACGATTTAGATTTATATAGGAACAATTAAATCCTCCAGGCTTTTGACGAAGCaacaagtgttaaaaaaaaatctcagctGCCGTTACAGACTCTacactgaatataataatagaagagaagaggtcgttttgttgccctttttaaattattttttaatactctCGCATCTCGAGAACAGCAATCAGTGACTAAATCCCCACAAAATAATgcgaaaaaaaatgcaaaaagaaaatgcatttatCGGTATTGCTAATGAAACGAAAGAAGAACAGGAGGAGATCAAGAGGAGAAGACACAGGCCAAATAAtatcatatatacagctctggaaaaaaatgaccactccagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattctcatttagagcatttatttacagaaaatgaaaaatgactgaaataacaaaaaaaacatttcagaggttctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagatcagaaacaatcaatatttggtggaataaccctggtttttatcacagtttttattcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggatcattttagcttggtttgatggcttgtgatcatccatcttcctctttattatattccagaggttttaaaatcagtaaaaccaaagaaactcattatttttaagtggtctttaatttttttccagagctgtatatatattatattgtatagtaTTATATGTATACATGAAGCCTATAACCTGTCCCTCAGCTCTGTACCAGAGTTTACCAAAAAACAGAAGTAAAAATACTGCAGTGTAGAAATGCACTGCTGCCACCTGCCTGCTGAACGCAGAGTTAAACACTTAACTCTATAATTAAAGAAGCTGCTGAGCGTTAAAGAAGCTGTTCCTCCTCCTGAAGATCCTCCGCCTCTATAAACTGAGGGAGGAAAGGGTTTGGGACCCCGAGGGTCCACCTGGCGTCGTTGTGCGTTCACGCGGCCTTTTCACGAGGTTAAAGAGACGAATTAACCCcgaaatattgtatattttaagcTTAAAAGTAACAATCAGGATGATACTGACAGAAGCTCCGCCCCCACCACCCTCTCCCctataatagtaatataataagtGAATTCCAGGCCTGTCACAATGATTACGTCTACAATTTAAAGATCATAAACTAAATCCTTAATATGATCCAACTATTAAATACTACTATAAATGACCCAGTATTAACTTAAACTCTTGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66409 lncRNA upstream 209 2426273 ~ 2427911 (+) True G49122
TU66406 lncRNA upstream 1952 2425130 ~ 2426168 (+) False G49122
TU66405 lncRNA upstream 23392 2404515 ~ 2404728 (+) True G49121
TU66404 lncRNA upstream 25143 2402683 ~ 2402977 (+) True G49120
TU66403 lncRNA upstream 29291 2398482 ~ 2398829 (+) True G49119
TU66400 lncRNA downstream 3156 2432799 ~ 2479371 (+) True G49116
TU66451 lncRNA downstream 227553 2657196 ~ 3150588 (+) True G49146
TU66455 lncRNA downstream 241174 2670817 ~ 2672813 (+) True G49150
TU66456 lncRNA downstream 251555 2681198 ~ 2681503 (+) True G49151
TU66460 lncRNA downstream 277380 2707023 ~ 2708224 (+) True G49154
XM_007231679.3 mRNA upstream 65896 2359922 ~ 2362224 (+) True LOC103028158
XM_007231153.2 mRNA upstream 426950 1999574 ~ 2001170 (+) True LOC103045867
XM_022670945.1 mRNA upstream 641758 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 664045 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 966422 1415274 ~ 1461698 (+) True LOC103041629
XM_007231678.3 mRNA downstream 35950 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 48948 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 80501 2510144 ~ 2521419 (+) True LOC103031418
XM_015600866.2 mRNA downstream 80501 2510144 ~ 2521419 (+) False LOC103031418
XM_015600864.2 mRNA downstream 97826 2527469 ~ 2583319 (+) False LOC103026437
TU65829 other upstream 1616855 808155 ~ 811265 (+) True G48714
TU66507 other downstream 553203 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 553281 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 553281 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1814885 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3189516 5619159 ~ 5627452 (+) True prok1

Expression Profile