RNA id: TU66405



Basic Information


Item Value
RNA id TU66405
length 214
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G49121
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2404515 ~ 2404728 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


cacagcgctaacgctcggaggaaagcacagcgactctaGTGGTTCTGAtacgtcagctcacagacgcagccttgtgctgatccacatcaccctaggagtgatgaggggaaagagcgccatctactctacccacccagagagagaaaggctaattgtgctctctcaggacttcAGCAGCTGATAACAAGCTACACCAACAGGATTTGAACTGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66404 lncRNA upstream 1538 2402683 ~ 2402977 (+) True G49120
TU66403 lncRNA upstream 5686 2398482 ~ 2398829 (+) True G49119
TU66402 lncRNA upstream 13934 2390362 ~ 2390581 (+) True G49118
TU66397 lncRNA upstream 19880 2384426 ~ 2384635 (+) True G49114
TU66393 lncRNA upstream 62006 2340205 ~ 2342509 (+) True G49112
TU66406 lncRNA downstream 20402 2425130 ~ 2426168 (+) False G49122
TU66409 lncRNA downstream 21545 2426273 ~ 2427911 (+) True G49122
TU66401 lncRNA downstream 23392 2428120 ~ 2429643 (+) True G49117
TU66400 lncRNA downstream 28071 2432799 ~ 2479371 (+) True G49116
TU66451 lncRNA downstream 252468 2657196 ~ 3150588 (+) True G49146
XM_007231679.3 mRNA upstream 42291 2359922 ~ 2362224 (+) True LOC103028158
XM_007231153.2 mRNA upstream 403345 1999574 ~ 2001170 (+) True LOC103045867
XM_022670945.1 mRNA upstream 618153 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 640440 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 942817 1415274 ~ 1461698 (+) True LOC103041629
XM_007231678.3 mRNA downstream 60865 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 73863 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 105416 2510144 ~ 2521419 (+) True LOC103031418
XM_015600866.2 mRNA downstream 105416 2510144 ~ 2521419 (+) False LOC103031418
XM_015600864.2 mRNA downstream 122741 2527469 ~ 2583319 (+) False LOC103026437
TU65829 other upstream 1593250 808155 ~ 811265 (+) True G48714
TU66507 other downstream 578118 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 578196 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 578196 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1839800 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3214431 5619159 ~ 5627452 (+) True prok1

Expression Profile