RNA id: TU66409


Basic Information

Item Value
RNA id TU66409
length 1613
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G49122
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2425130 ~ 2427911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAATTGGAAACTAAAAATGaggaaaattaataaaaacccATTTCTTCACTAAACTATTGTAAGtggaaaaacataaaagaatTGGGTGTTAAAGTTCAATATTGCAACTAACAGTGAGGACAGTTATCTTAACAGATCTGATATAACTGATCTGGGATTTGCATGTCTTGACAACACAGCTGTATTTTCCTCACTCTGGACTTGATGATATCGTTTAATACTTAATGTTTGTTGGGTTGTGAGGGATGTTTAAGGCATAATATATGCTGATCAGATCTGATTGTCCAGGCCGACTGAAatctgtacaaatctgattataatCACATTCTAATCCACCTCCAAATGTGTTGATCTACAATAATCTGATTTTATGAGGTTTTTGCCCGTCTAGACTATCAAATATTAATCTAGATATAGTGTAGATTCACTAATAATCAGATCTGggctgcagtctgaacacagtctgataatttttaaagctttagttCTTTAGTTTGTTTCAAAAAGTTAGGGTTCAGCGCTTTAGGGACTCTTTTCATGGTTAGGTTTGATTGGAAGGAAAAGTCTGTGTTAAACTGACGGTAATCTCTTTTTTCAAGAAttgtaataatgaaaataataaagataataaataataactgtaatagATCTAATAACAAACGGCCTAACCCAGCCCAACAATGCCACTAAATCACAAAATCCAAAatcctaccaccaccatgctttacagtttTCTCGTTTTGTGTGCTGGtgctttgtttggttttgttatagttaaggtttctttttttgttaagaccCTCACTACTTCCTGTccaaaagactaaaaaaagGTGCGTCAAACAGTTAAAGAAGTGATCGAGCATTTTATCATCTGTACACTAGTTGCTTCGTCAATAGCCTGGATATAAAAGGGGGTGAAAACGcacttaaagtgacagtctgtaagttGTGTGAatttggggatttggagacctctctggtgagaatgtgtaattacagaGAGCCGATGTGGAAGAGTAGTTTTATggcaggttaatgtaaataaattgctgtGTGTGAAATTCTGTTTAAGTATAATATTGCTTTGttaattttgttcatttattaaatCTGTCTAAAATGTAGAGAGATATTACATTCAACAAACCTGCCAGACCACTCTGTTTACTcggattttaaaataaatatattagatgCTGATaccatttattacaatattttgtcgTCTTCATACTAAGGAAAATTAAtactgcttttaatttaaaagacaaaaaatcttagggactgctgctttaataattATGAAATGTTGTGGTTCAAAAACAGTCACTTTAACATTTGTCAGCTTAACTTTCTGACCGTTTGagactaaataataataataataaaaataaacaaatgtaggtgaatattttttttgttgttgtttttctacTTGTAAAAGTTTGGtgaagaattatttttttttatttcagccttttacAAAGAGAATTCATGATCAAATTGGAACAAATTTTAATTAACAAATTTAATAATCTtcctattttttccatttttgcatctATTAACAGAAATCTGATTGTATAATCTAACATACTATgttacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66406 lncRNA upstream 105 2425130 ~ 2426168 (+) False G49122
TU66405 lncRNA upstream 21545 2404515 ~ 2404728 (+) True G49121
TU66404 lncRNA upstream 23296 2402683 ~ 2402977 (+) True G49120
TU66403 lncRNA upstream 27444 2398482 ~ 2398829 (+) True G49119
TU66402 lncRNA upstream 35692 2390362 ~ 2390581 (+) True G49118
TU66401 lncRNA downstream 209 2428120 ~ 2429643 (+) True G49117
TU66400 lncRNA downstream 4888 2432799 ~ 2479371 (+) True G49116
TU66451 lncRNA downstream 229285 2657196 ~ 3150588 (+) True G49146
TU66455 lncRNA downstream 242906 2670817 ~ 2672813 (+) True G49150
TU66456 lncRNA downstream 253287 2681198 ~ 2681503 (+) True G49151
XM_007231679.3 mRNA upstream 64049 2359922 ~ 2362224 (+) True LOC103028158
XM_007231153.2 mRNA upstream 425103 1999574 ~ 2001170 (+) True LOC103045867
XM_022670945.1 mRNA upstream 639911 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 662198 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 964575 1415274 ~ 1461698 (+) True LOC103041629
XM_007231678.3 mRNA downstream 37682 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 50680 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 82233 2510144 ~ 2521419 (+) True LOC103031418
XM_015600866.2 mRNA downstream 82233 2510144 ~ 2521419 (+) False LOC103031418
XM_015600864.2 mRNA downstream 99558 2527469 ~ 2583319 (+) False LOC103026437
TU65829 other upstream 1615008 808155 ~ 811265 (+) True G48714
TU66507 other downstream 554935 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 555013 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 555013 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1816617 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3191248 5619159 ~ 5627452 (+) True prok1

Expression Profile