RNA id: TU66451


Basic Information

Item Value
RNA id TU66451
length 248
lncRNA type read_through
GC content 0.33
exon number 2
gene id G49146
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2657196 ~ 3150588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttatagttacagtcagagtaattagttagattacttgttactaggggtgtgacgagacactaatatcatgagactagacgagacacgatactgggttcacgagaacgagacgagacgagatttaaaaataaaattttaaagaaaatgtcaaaaatgaaaaatggcttgaaaatttgtttgacaaaatcatataacgcaaacttaacagactggtttctctcacacattgattctataagaaacagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66400 lncRNA upstream 177825 2432799 ~ 2479371 (+) True G49116
TU66401 lncRNA upstream 227553 2428120 ~ 2429643 (+) True G49117
TU66409 lncRNA upstream 229285 2426273 ~ 2427911 (+) True G49122
TU66406 lncRNA upstream 231028 2425130 ~ 2426168 (+) False G49122
TU66405 lncRNA upstream 252468 2404515 ~ 2404728 (+) True G49121
TU66736 lncRNA downstream 83086 3233674 ~ 3234451 (+) True G49351
TU66737 lncRNA downstream 83120 3233708 ~ 3234451 (+) False G49351
TU66738 lncRNA downstream 83120 3233708 ~ 3234408 (+) False G49351
TU66735 lncRNA downstream 83413 3234001 ~ 3234451 (+) False G49351
TU66739 lncRNA downstream 83413 3234001 ~ 3234408 (+) False G49351
XM_007231672.3 mRNA upstream 40524 2603333 ~ 2616672 (+) True LOC103025499
XM_007243571.2 mRNA upstream 54582 2599242 ~ 2602614 (+) True LOC103037045
XM_022671010.1 mRNA upstream 59560 2584545 ~ 2597636 (+) False LOC103035089
XM_022671009.1 mRNA upstream 59560 2584547 ~ 2597636 (+) True LOC103035089
XM_022671013.1 mRNA upstream 59560 2584547 ~ 2597636 (+) False LOC103035089
XM_007231666.3 mRNA downstream 21421 3172009 ~ 3175759 (+) True dmrta2
XM_022671025.1 mRNA downstream 369020 3519608 ~ 4194714 (+) True agbl4
XM_007235278.2 mRNA downstream 869865 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA downstream 871327 4021915 ~ 4041702 (+) False bend5
XM_022671029.1 mRNA downstream 1049351 4199939 ~ 4230987 (+) True spata6
TU65829 other upstream 1845931 808155 ~ 811265 (+) True G48714
TU66895 other downstream 1093940 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2468571 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 2626464 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 3220932 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 3833602 6984190 ~ 6984261 (+) True trnae-cuc

Expression Profile