RNA id: TU66455


Basic Information

Item Value
RNA id TU66455
length 1276
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G49150
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2670817 ~ 2672813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatatgttttaatatcccAGCAGGTAATAGAAAACAGAGCAGAATATGACTTGAAATAAATTGGTTGCCATATATTCAGTGCATCACTAAGAAATCATCGAATGCTGTGATGCATGCTATTATGCATCTTGAAAATACAGTATCTTTCAGTATCACATCACaacgtgttttcttttttttttttataggtttttTTCTCATATCTTACACTTTTTTAAACCCAGATTCCAGCATTTAAAGCATATGAAGAGATGAAAAGTGCTGGAACAAGCTCTGCAGCTAAATGTCCCCATCTGTTTGATGACACTGTCGCTAACCTCTCCGCTGTGCCCTCCACGTCTCCTTGCCTGTTGATTTAACCAGTCCCAGCTGCCTCCCATCACCACGGATCTCATTCTCCTAATTGGCTTTTAATTAAGAGCGGCAGACCTGCTCAGCATGCGGAGAACCAGAGAGCGctccaattaaaaacaaataaccaaGATTAAATCCTTTCATTGTCCCTGAAGAGAAACCCCTCTCCAAATCTCACTCTCATCCCTGCAATCCTCAGAACTTTCCTATAGTAAACTGTAGATAAACAGAGATTTCACTGCATGCCTGGATTATATCAttcattttccttttcttctgtatattttccttttttccctgtttctctctctgggtgtacTGTATTTTGGAGTGGGCCTACAGCAGTGTTGGGTTCTAAATATTGGTTCTATCCAAAAGTAGAACCTCATCACTAAATTAGTTTAatgcacttcataatctgattactacAGAACTTCAGAGTTTGCCAGTTTTACATGTACTTGAGTTATCAAAATTTAATTGGGAAATCCCAGCAATAATCTGATTTTTACTTTGCAATTAGCCAATGAACTCACAGAACCAGAGGGGATGCATACATGCACTGACATACCCCAAAATACTGTGGTTAAGAGTTTACTCCGAATACTCCGAATACTCCGaatactccggttaaaagtatatatacacCCACTGAGATACCCCAGAatactccggttaagagtatatataCACCCACAGAGATACCCCAGAatactccggttaagagtatatataCACCCACTGAGATACCCCAGAatactccggttaagagtatatataCACCCACTGAGATACCCCAGAatactccggttaagagtatatataCACCCACTAAAGAATCCCACAATACTCAGTATAGATGTACTAAGAAATCTCAAAATACTCCACTTAAGAGTATAGatgtactaaaaaaaacagatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66400 lncRNA upstream 191446 2432799 ~ 2479371 (+) True G49116
TU66401 lncRNA upstream 241174 2428120 ~ 2429643 (+) True G49117
TU66409 lncRNA upstream 242906 2426273 ~ 2427911 (+) True G49122
TU66406 lncRNA upstream 244649 2425130 ~ 2426168 (+) False G49122
TU66405 lncRNA upstream 266089 2404515 ~ 2404728 (+) True G49121
TU66456 lncRNA downstream 8385 2681198 ~ 2681503 (+) True G49151
TU66460 lncRNA downstream 34210 2707023 ~ 2708224 (+) True G49154
TU66461 lncRNA downstream 34210 2707023 ~ 2709154 (+) False G49154
XR_002650124.1 lncRNA downstream 35891 2708704 ~ 2724228 (+) True LOC103026017
XR_002650126.1 lncRNA downstream 35891 2708704 ~ 2724228 (+) False LOC103026017
XM_022671016.1 mRNA upstream 9361 2616841 ~ 2661456 (+) True LOC107196890
XM_007231672.3 mRNA upstream 54145 2603333 ~ 2616672 (+) True LOC103025499
XM_007243571.2 mRNA upstream 68203 2599242 ~ 2602614 (+) True LOC103037045
XM_022671013.1 mRNA upstream 73181 2584547 ~ 2597636 (+) False LOC103035089
XM_022671015.1 mRNA downstream 1403 2674216 ~ 2692784 (+) True osbpl9
XM_007231671.3 mRNA downstream 52672 2725485 ~ 2734540 (+) True tor3a
XM_007231670.3 mRNA downstream 63491 2736304 ~ 2744452 (+) True LOC103024869
XM_022671008.1 mRNA downstream 75031 2747844 ~ 2809424 (+) False eps15
XM_022671007.1 mRNA downstream 75031 2747844 ~ 2809424 (+) False eps15
TU65829 other upstream 1859552 808155 ~ 811265 (+) True G48714
TU66507 other downstream 310033 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 310111 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 310111 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1571715 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2946346 5619159 ~ 5627452 (+) True prok1

Expression Profile