RNA id: XR_002650130.1


Basic Information

Item Value
RNA id XR_002650130.1
length 1552
lncRNA type inter_gene
GC content 0.41
exon number 21
gene id LOC103026017
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2708704 ~ 2724228 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATGGCGCCGCTGCCCGTTTTCCGGCCTCATTCAGCTCCGGATCAGAACGAGCAGGACTAGTTTAACTGGCTGGTTTATGCTGCTTGAGCTGATGTGCACAATCTCTACAGCATATGCTTGGAAGTGGTGAAGCGAGAGACAGTAAAAGTTAATTTGaagGATGGTGGACCAGTGGAATCAAGAGGGGACTTCTGCTGGGAGTGTGATGAAGTGGTGGGATGAGGCTGGATGAAGGgaGAGAAAATATTGCGGTGTCAAGCTCTGTAAAGtgtAAATGGTGGGAAGATCATGGAATCAGTGAAGGAAGAAGCCAGTGTTGGCTGTTTGAAGGCAGTACTACAGgattgacTTGCATCACGTTCAGTTAATGTGAATGTTGGAGGGATGTGTGGAGAACAGCAGTGATGTGTGGCTTTAATAAGTATGCTGCTTTTAAAAGAACATGGAATTGCATGGCTGGATTCTGCTGGTGGCCGCGAGCATGGTGGCTGTATATTGagAATGTTTAAGAGGGATGTGTCGAGAACAGGAGTGACATGTGGCTTAAATGAGATGAGCAGACCCTGCTGTGTGTTCTGATGGATGCTGGATCAGTGAACTGAAGTGAAAGAGTTTAGGAGAACTCTGGGAGGAAACTGAAGCAGTGGATGAAGATGGATAAAAGTGTATGAAGATGCGGTGTCTGACGTCTATACCTGAGCAGGAAGTTGGGCTGTTGTTGCAGATTCTGATTCGTTCACACCAATGGTGTCTGATCATTGACAGGTGAAGCTGCTGGACTCCTGGAGCTGAACTGATCTGATCTGGGTTCAGTTGAAGGATTCTGGGCGTGACTGAGGGACAGATGTGCTGGAGTCCAACATCACCACACTGCTGATGCTGAGGAAACAGCATATTAAAGAGCATTAAGCAGTGGGATGAATCATTTTTGAGGTGCTGGACATGTGTGGTCCTCTACTGAAGATACTGAGATTGAAAGCAGGATTGCTGCTGGAACAGGGAGAGCTGGTTCGGAGGCGGAAGCAGCCGTTCTTTTGGGTGTTTTTGTAACTGATGAAATCAAATGTTTTGCTTTCTTAATGTAATAAAGGCCTTTTTTAAGTCAATATTGTGTTCTTGTTAGTttgtttaaagatttttttttgattgagTTTAGTTTGATAACCTTACAGTGTTTGGCAtctaaaactaataatttaatgtaagtttttttttttttttttttttttaaagcagtaaaatTACACTTCAAAGTATTATGAAATATTGCAgttaataaatggttttaatttttttaaatcgttTGCTGATGACTGGTTATTCACGACTGTCTACTTAGTTATGGTTAAAAGTGGAACCTGATGGCCGTGTTAACTTCTACATAAGGAAATGTAAACAGTTCTGTTTTCCAGGAAGGATTTTATTCCCTGCTGTTTTCCTCCAGTTTCATGAGGAAGTTGAATGTATGGGAAATGTGCTTCCTTGATTTGTACTTGCATAAAATTTTGTGgaatatttgaaaataaaacaatttaaatctGTCTATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66460 lncRNA upstream 480 2707023 ~ 2708224 (+) True G49154
TU66456 lncRNA upstream 27201 2681198 ~ 2681503 (+) True G49151
TU66455 lncRNA upstream 35891 2670817 ~ 2672813 (+) True G49150
TU66400 lncRNA upstream 229333 2432799 ~ 2479371 (+) True G49116
TU66401 lncRNA upstream 279061 2428120 ~ 2429643 (+) True G49117
TU66484 lncRNA downstream 116084 2840312 ~ 2840783 (+) True G49163
TU66485 lncRNA downstream 143234 2867462 ~ 2869521 (+) True G49164
TU66483 lncRNA downstream 231026 2955254 ~ 2976029 (+) True G49162
TU66516 lncRNA downstream 372135 3096363 ~ 3100087 (+) True G49185
TU66736 lncRNA downstream 509446 3233674 ~ 3234451 (+) True G49351
XM_022671015.1 mRNA upstream 15920 2674216 ~ 2692784 (+) True osbpl9
XM_022671016.1 mRNA upstream 47248 2616841 ~ 2661456 (+) True LOC107196890
XM_007231672.3 mRNA upstream 92032 2603333 ~ 2616672 (+) True LOC103025499
XM_007243571.2 mRNA upstream 106090 2599242 ~ 2602614 (+) True LOC103037045
XM_022671012.1 mRNA upstream 111068 2584548 ~ 2597636 (+) False LOC103035089
XM_007231671.3 mRNA downstream 1257 2725485 ~ 2734540 (+) True tor3a
XM_007231670.3 mRNA downstream 12076 2736304 ~ 2744452 (+) True LOC103024869
XM_022671008.1 mRNA downstream 23616 2747844 ~ 2809424 (+) False eps15
XM_022671007.1 mRNA downstream 23616 2747844 ~ 2809424 (+) False eps15
XM_022671006.1 mRNA downstream 23617 2747845 ~ 2809424 (+) True eps15
TU65829 other upstream 1897439 808155 ~ 811265 (+) True G48714
TU66507 other downstream 258618 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 258696 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 258696 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1520300 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2894931 5619159 ~ 5627452 (+) True prok1

Expression Profile