RNA id: TU66485


Basic Information

Item Value
RNA id TU66485
length 238
lncRNA type intronic
GC content 0.32
exon number 2
gene id G49164
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2867462 ~ 2869521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctatactactatactactatactcaTATACTCCTATACctctatactcctatactactatactcctatactcctatactactatactactatactcaTATACTCCTATACctctatactcctatactactATACTTCTACACTCCTATATtcctatactcctatactactATACTCATATACTCCTATACTCCTATACTCCTATATTCCTATACTACTATACTTCTACACTCCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66484 lncRNA upstream 26679 2840312 ~ 2840783 (+) True G49163
XR_002650124.1 lncRNA upstream 143234 2708704 ~ 2724228 (+) True LOC103026017
XR_002650126.1 lncRNA upstream 143234 2708704 ~ 2724228 (+) False LOC103026017
XR_002650128.1 lncRNA upstream 143234 2708704 ~ 2724228 (+) False LOC103026017
XR_002650129.1 lncRNA upstream 143234 2708704 ~ 2724228 (+) False LOC103026017
TU66483 lncRNA downstream 85733 2955254 ~ 2976029 (+) True G49162
TU66516 lncRNA downstream 226842 3096363 ~ 3100087 (+) True G49185
TU66736 lncRNA downstream 364153 3233674 ~ 3234451 (+) True G49351
TU66737 lncRNA downstream 364187 3233708 ~ 3234451 (+) False G49351
TU66738 lncRNA downstream 364187 3233708 ~ 3234408 (+) False G49351
XM_022671008.1 mRNA upstream 58038 2747844 ~ 2809424 (+) False eps15
XM_022671007.1 mRNA upstream 58038 2747844 ~ 2809424 (+) False eps15
XM_022671006.1 mRNA upstream 58038 2747845 ~ 2809424 (+) True eps15
XM_007231670.3 mRNA upstream 123010 2736304 ~ 2744452 (+) True LOC103024869
XM_007231671.3 mRNA upstream 132922 2725485 ~ 2734540 (+) True tor3a
XM_007231669.3 mRNA downstream 12164 2881685 ~ 2917431 (+) True rnf11
XM_022671018.1 mRNA downstream 113374 2982895 ~ 3152050 (+) True faf1
XM_007231666.3 mRNA downstream 302488 3172009 ~ 3175759 (+) True dmrta2
XM_022671025.1 mRNA downstream 650087 3519608 ~ 4194714 (+) True agbl4
XM_007235278.2 mRNA downstream 1150932 4020453 ~ 4041702 (+) True bend5
TU65829 other upstream 2056197 808155 ~ 811265 (+) True G48714
TU66507 other downstream 113325 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 113403 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 113403 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1375007 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2749638 5619159 ~ 5627452 (+) True prok1

Expression Profile