RNA id: TU66516


Basic Information

Item Value
RNA id TU66516
length 238
lncRNA type intronic
GC content 0.35
exon number 2
gene id G49185
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3096363 ~ 3100087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttataaagagttttaagatttcagaaatcaatatttggtggaataactctggtttttaatcacagttttcatgcatctccgcatgttctcctccaccagtcttacacactgcttttgaataactttatgctttacactcctggtgcagaaattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaa

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66483 lncRNA upstream 120334 2955254 ~ 2976029 (+) True G49162
TU66485 lncRNA upstream 226842 2867462 ~ 2869521 (+) True G49164
TU66484 lncRNA upstream 255580 2840312 ~ 2840783 (+) True G49163
XR_002650124.1 lncRNA upstream 372135 2708704 ~ 2724228 (+) True LOC103026017
XR_002650126.1 lncRNA upstream 372135 2708704 ~ 2724228 (+) False LOC103026017
TU66736 lncRNA downstream 133587 3233674 ~ 3234451 (+) True G49351
TU66737 lncRNA downstream 133621 3233708 ~ 3234451 (+) False G49351
TU66738 lncRNA downstream 133621 3233708 ~ 3234408 (+) False G49351
TU66735 lncRNA downstream 133914 3234001 ~ 3234451 (+) False G49351
TU66739 lncRNA downstream 133914 3234001 ~ 3234408 (+) False G49351
XM_007231669.3 mRNA upstream 178932 2881685 ~ 2917431 (+) True rnf11
XM_022671017.1 mRNA upstream 219935 2828935 ~ 2876428 (+) True ttc39a
XM_022671008.1 mRNA upstream 286939 2747844 ~ 2809424 (+) False eps15
XM_007231666.3 mRNA downstream 71922 3172009 ~ 3175759 (+) True dmrta2
XM_022671025.1 mRNA downstream 419521 3519608 ~ 4194714 (+) True agbl4
XM_007235278.2 mRNA downstream 920366 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA downstream 921828 4021915 ~ 4041702 (+) False bend5
XM_022671029.1 mRNA downstream 1099852 4199939 ~ 4230987 (+) True spata6
TU66507 other upstream 82733 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 82733 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 82733 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 2285098 808155 ~ 811265 (+) True G48714
TU66895 other downstream 1144441 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2519072 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 2676965 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 3271433 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 3884103 6984190 ~ 6984261 (+) True trnae-cuc

Expression Profile